PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc02425.1.g00040.1.sm.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GATA
Protein Properties Length: 161aa    MW: 17850.1 Da    PI: 9.7175
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc02425.1.g00040.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA61.21.3e-192660135
                          GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                                  C+ C+t kTplWR gp+g+k+LCnaCG++yrk+++
  Zpz_sc02425.1.g00040.1.sm.mk 26 CADCHTRKTPLWRGGPEGPKSLCNACGIRYRKRRR 60
                                  ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577161.66E-131960No hitNo description
PROSITE profilePS5011412.7962056IPR000679Zinc finger, GATA-type
SMARTSM004018.4E-182081IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.106.6E-162078IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.33E-112553No hitNo description
PfamPF003201.7E-172660IPR000679Zinc finger, GATA-type
PROSITE patternPS0034402651IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MELETDSISP SPDDDTTASG GEAKACADCH TRKTPLWRGG PEGPKSLCNA CGIRYRKRRR  60
QTRGLDADAE AQDQQQQKKK AAAASSGKDD KKTEDKEEYE GEKKKEKQAV TVELRVVGFG  120
KEVAGFSKLR QRRRMRRKKC LSEEERAAVL LMALSGAIYA S
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15559RKRRR
2127138KLRQRRRMRRKK
3130136QRRRMRR
4131138RRRMRRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc02425.1.g00040.1.sm.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025818098.13e-52GATA transcription factor 15-like
TrEMBLA0A0A9NUC35e-67A0A0A9NUC3_ARUDO; Uncharacterized protein
STRINGPavir.Eb04066.1.p7e-50(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24183892
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49300.13e-18GATA transcription factor 16