PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc02407.1.g00140.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family TALE
Protein Properties Length: 349aa    MW: 37648.1 Da    PI: 6.1886
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc02407.1.g00140.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox25.91.7e-082873192254
                                   SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                      Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                                   ++yps +e+ +LA ++gL+  q+++WF N R +
  Zpz_sc02407.1.g00140.1.am.mk 287 HPYPSDSEKLRLAVSTGLSRGQISNWFINARVR 319
                                   89*****************************88 PP
2BELL54.72.4e-18148210971
                          BELL   9 kakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeq 71 
                                   +akLl ll e++ r ++y  +l  v+ssFe + g g+a+ Yt+l ++a++rhF +L+ ai  +
  Zpz_sc02407.1.g00140.1.am.mk 148 QAKLLGLLGELESRQERYFGELGRVASSFEPALGPGAAAAYTALMSQAMARHFGNLRRAILRR 210
                                   58**********************************************************876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.3E-1281209IPR006563POX domain
PfamPF075264.3E-2486207IPR006563POX domain
PROSITE profilePS5007111.337260323IPR001356Homeobox domain
SMARTSM003891.2E-8263327IPR001356Homeobox domain
CDDcd000864.34E-11263324No hitNo description
Gene3DG3DSA:1.10.10.604.7E-25268329IPR009057Homeodomain-like
SuperFamilySSF466891.07E-16269331IPR009057Homeodomain-like
PfamPF059208.4E-17280319IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MSQHREKGSP KQAPVPHDDS GNRSWQLPLP FEQCGRCNEH TCQADGLKGA GPLVLTLGPL  60
GSGADRPCSS CSCGAAPGPT PETLAVLRGS RYLGPAQELL SEAVRVADDD LAGGGTGDGE  120
DAATEGKLQA VARRMMRRAA KSDADGVQAK LLGLLGELES RQERYFGELG RVASSFEPAL  180
GPGAAAAYTA LMSQAMARHF GNLRRAILRR LRRHASAAAT RRREAVTGAE DDDENDDDDE  240
EEKVDRVVRR TMLAAAARAE QAWRPLRGLP EGSVAVLRAW LFDHFLHPYP SDSEKLRLAV  300
STGLSRGQIS NWFINARVRL WKPMIEEMYN DEFSEDGPLS NSTSGASSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrm_A7e-17269327563Homeobox protein Meis2
4xrm_B7e-17269327563Homeobox protein Meis2
5bng_A7e-17269327159Homeobox protein Meis2
5bng_B7e-17269327159Homeobox protein Meis2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc02407.1.g00140.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0823963e-83AY082396.1 Zea mays knotted1-interacting protein (kip) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022678610.11e-109BEL1-like homeodomain protein 10 isoform X1
RefseqXP_022678611.11e-109BEL1-like homeodomain protein 10 isoform X1
RefseqXP_022678612.11e-109BEL1-like homeodomain protein 10 isoform X1
TrEMBLA0A2T7C2N21e-104A0A2T7C2N2_9POAL; Uncharacterized protein
STRINGSi036329m1e-104(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP77153146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34610.27e-36BEL1-like homeodomain 6