PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Zpz_sc02399.1.g00050.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 236aa MW: 24598.5 Da PI: 5.2776 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 51.6 | 2.3e-16 | 28 | 76 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ykGVr ++ +g+Wv+e+r p g ++r++lg++ tae Aa+a++aa ++l+g Zpz_sc02399.1.g00050.1.sm.mk 28 YKGVRMRS-WGSWVSEVRAP---GAKTRIWLGSHSTAEAAARAYDAALLCLRG 76 9****998.*******9998...445*************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.7E-26 | 27 | 86 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.16E-16 | 27 | 87 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 8.8E-29 | 27 | 92 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.784 | 27 | 86 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.9E-10 | 28 | 76 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 9.80E-15 | 28 | 88 | No hit | No description |
PRINTS | PR00367 | 3.0E-8 | 28 | 39 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.0E-8 | 50 | 66 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 236 aa Download sequence Send to blast |
MVKTAALCND TAAAAPAAAK RNGGKRTYKG VRMRSWGSWV SEVRAPGAKT RIWLGSHSTA 60 EAAARAYDAA LLCLRGSAAA ADLNFPVQFP INDIPHAAMS PKSIQRVAAA AAAATSATAF 120 ASRADDADVA CCSGDDSTPA CSSSSGSDAS AVSSPGSTVT SEAETDAACC HGDQKLRDGD 180 VVDYSLLADI DAYFPSPKCM EYAMMDPCSA FFAPTPMAMM SDDDVCCRWY NKSYNR |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Zpz_sc02399.1.g00050.1.sm.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK370870 | 1e-69 | AK370870.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2118P17. | |||
GenBank | AK376100 | 1e-69 | AK376100.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3114M17. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004964908.1 | 8e-71 | ethylene-responsive transcription factor ERF014 | ||||
TrEMBL | K3Y1B3 | 2e-69 | K3Y1B3_SETIT; Uncharacterized protein | ||||
STRING | Si007977m | 3e-70 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3197 | 34 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G44830.1 | 5e-23 | ERF family protein |