PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc02354.1.g00040.1.am.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family Whirly
Protein Properties Length: 192aa    MW: 21435.5 Da    PI: 9.9727
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc02354.1.g00040.1.am.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly166.18.9e-523115416139
                          Whirly  16 ptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkal 94 
                                     + ++a+ sg ++++r+G+++l++ +a+++rkyd++kkq fals+tev++l++l++ esceffhdp++k+sneG+v+k+l
  Zpz_sc02354.1.g00040.1.am.mkhc  31 AYLSAIHSGGFRVSRNGSVMLTFFPAIGQRKYDYSKKQLFALSPTEVGSLISLGPAESCEFFHDPSMKSSNEGQVKKSL 109
                                     56899************************************************************************** PP

                          Whirly  95 kvePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139
                                     ++ Pl + sG+fvnl+v n+l+k+ +++svP++k+efa+lr++l+
  Zpz_sc02354.1.g00040.1.am.mkhc 110 SLTPLGNDSGYFVNLTVLNNLQKTTDRVSVPITKGEFAALRTALS 154
                                     ******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.30.31.101.1E-5833173IPR009044ssDNA-binding transcriptional regulator
PfamPF085366.4E-4933151IPR013742Plant transcription factor
SuperFamilySSF544471.26E-5635192IPR009044ssDNA-binding transcriptional regulator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006281Biological ProcessDNA repair
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005739Cellular Componentmitochondrion
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MKIKRGFRCS SEGCSAAERW TRRWACPFLL AYLSAIHSGG FRVSRNGSVM LTFFPAIGQR  60
KYDYSKKQLF ALSPTEVGSL ISLGPAESCE FFHDPSMKSS NEGQVKKSLS LTPLGNDSGY  120
FVNLTVLNNL QKTTDRVSVP ITKGEFAALR TALSFALPHI MGWDQVLTNH HPAPQGSKPR  180
MERPHPDSEW ER
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4kop_A8e-602917029169Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_B8e-602917029169Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_C8e-602917029169Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_D8e-602917029169Single-stranded DNA-binding protein WHY2, mitochondrial
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtSingle-stranded DNA-binding protein that associates with mitochondrial DNA and may play a role in the regulation of the gene expression machinery. Seems also to be required to prevent break-induced DNA rearrangements in the mitochondrial genome. Can bind to melt double-stranded DNA in vivo. {ECO:0000269|PubMed:18423020, ECO:0000269|PubMed:20551348, ECO:0000269|PubMed:22762281}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc02354.1.g00040.1.am.mkhc
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006646903.11e-100PREDICTED: single-stranded DNA-binding protein WHY2, mitochondrial
SwissprotQ8VYF74e-59WHY2_ARATH; Single-stranded DNA-binding protein WHY2, mitochondrial
TrEMBLJ3L9R09e-97J3L9R0_ORYBR; Uncharacterized protein
STRINGPavir.Ab00418.1.p8e-98(Panicum virgatum)
STRINGOB02G13770.11e-97(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30123885
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71260.12e-61WHIRLY 2