PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc02347.1.g00040.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 373aa    MW: 41339.6 Da    PI: 10.206
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc02347.1.g00040.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.34e-092873347
                                  SS-HHHHHHHHHHHHHTTTT..-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding  3 rWTteEdellvdavkqlGgg..tWktIartmgkgRtlkqcksrwqky 47
                                   WT+ E +++ +a + l  +  +W+++a+ ++ gRt  +++s+++++
  Zpz_sc02347.1.g00040.1.am.mk 28 VWTAKENKQFERALAALDLRcpDWEKVAQAIP-GRTVDEVVSHFRSL 73
                                  5*******************************.***********975 PP
2Myb_DNA-binding44.63.2e-14145189347
                                   SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                   +WT+eE+ l++ + k++G+g+W+ I+r +  +Rt+ q+ s+ qky
  Zpz_sc02347.1.g00040.1.am.mk 145 PWTEEEHRLFLLGLKKYGKGDWRNISRNFVHTRTPTQVASHAQKY 189
                                   8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129311.2562478IPR017884SANT domain
SMARTSM007175.6E-52576IPR001005SANT/Myb domain
PfamPF002493.3E-72873IPR001005SANT/Myb domain
CDDcd001671.12E-62973No hitNo description
SuperFamilySSF466891.58E-82981IPR009057Homeodomain-like
PROSITE profilePS5129419.53138194IPR017930Myb domain
SuperFamilySSF466898.97E-18139194IPR009057Homeodomain-like
TIGRFAMsTIGR015574.9E-17141192IPR006447Myb domain, plants
SMARTSM007172.9E-13142192IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.0E-12142188IPR009057Homeodomain-like
PfamPF002494.3E-12145189IPR001005SANT/Myb domain
CDDcd001672.99E-11145190No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MMREAYMEVL PPMDHYTSRS NWFLGARVWT AKENKQFERA LAALDLRCPD WEKVAQAIPG  60
RTVDEVVSHF RSLEVDVRQI ESGVMPFPSY GGGRGGAANS FTLQWDGSSG HVAGDFRHGG  120
YRFAGGCGKR HPGRTPEQER KKGVPWTEEE HRLFLLGLKK YGKGDWRNIS RNFVHTRTPT  180
QVASHAQKYF IRLNSGGKDK RRSSIHDITT VNLNDDQPPS PTQSSLITKQ SNALAPTAAV  240
SQFSLKGDTK QHGSANLPFN SPSRTPGGMP AYGMGLQDQE QEPFTDGDTV VQKVLGWISS  300
FLSRLTSLIH TAMKERGQLG SSPMQAGPFL RRRREREAMC CVDVQKGKTK RAGEKVEGKN  360
YSPLPGIEPG SPA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A3e-142690873RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00296DAPTransfer from AT2G38090Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc02347.1.g00040.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817822.11e-163transcription factor DIVARICATA-like
SwissprotQ8S9H75e-76DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA5HJS51e-164A5HJS5_9POAL; MYB_Al protein
STRINGSi002426m1e-156(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP78863348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.17e-70MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]