PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc02336.1.g00060.1.sm.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

ARR-B

Protein Properties

Length: 273aa MW: 31211.6 Da PI: 5.6196

Description

ARR-B family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc02336.1.g00060.1.sm.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	80	2.8e-25	201	250	1	51
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 kpr++W+ eLH++Fv av+qL G++kA+Pk+ilelm+v+ Lt+e+v+SHLQ Zpz_sc02336.1.g00060.1.sm.mk 201 KPRVVWSVELHRKFVAAVNQL-GIDKAVPKRILELMNVEKLTRENVASHLQ 250 79*****************.*************************** PP
2	Response_reg	78.9	1.8e-26	15	123	1	109
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEES CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvta 79 vl vdD+p+ +++l+++l++ +y +v+++ ++ al+ll+e++ +Dl++ D+ mp+mdG++ll+ e++lp+i+++ Zpz_sc02336.1.g00060.1.sm.mk 15 VLAVDDDPVCLKVLETLLRRCQY-HVTTTNQAITALKLLREHRdmFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSV 93 799******************.************************************87754.558**** PP TTTHHHHHHHHHTTESEEEESS--HHHHHH CS Response_reg 80 hgeeedalealkaGakdflsKpfdpeelvk 109 +ge + + + + Ga d+l Kp+ +eel++ Zpz_sc02336.1.g00060.1.sm.mk 94 NGETKSVMKGITHGACDYLIKPVRIEELRN 123 **************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PIRSF	PIRSF036392	4.4E-149	1	251	IPR017053	Response regulator B-type, plant
SuperFamily	SSF52172	6.69E-36	12	139	IPR011006	CheY-like superfamily
Gene3D	G3DSA:3.40.50.2300	8.3E-42	12	161	No hit	No description
SMART	SM00448	7.4E-30	13	125	IPR001789	Signal transduction response regulator, receiver domain
PROSITE profile	PS50110	42.461	14	129	IPR001789	Signal transduction response regulator, receiver domain
Pfam	PF00072	7.7E-24	15	124	IPR001789	Signal transduction response regulator, receiver domain
CDD	cd00156	9.65E-25	16	128	No hit	No description
Gene3D	G3DSA:1.10.10.60	3.5E-25	199	250	IPR009057	Homeodomain-like
SuperFamily	SSF46689	5.91E-16	199	251	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	8.6E-23	201	250	IPR006447	Myb domain, plants
Pfam	PF00249	1.4E-5	203	250	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000160	Biological Process	phosphorelay signal transduction system
GO:0009736	Biological Process	cytokinin-activated signaling pathway
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 273 aa Download sequence Send to blast
MEEKKRDQFP VGMRVLAVDD DPVCLKVLET LLRRCQYHVT TTNQAITALK LLREHRDMFD 60 LVISDVHMPD MDGFKLLELV GLEMDLPVIM LSVNGETKSV MKGITHGACD YLIKPVRIEE 120 LRNIWQHVVR RKFSSREHSN LDIYKEPPTS DSCHGQSQIV SRASDQSGRL SKKRKEPHSE 180 EEDDSDENDF QEGDEPSAAK KPRVVWSVEL HRKFVAAVNQ LGIDKAVPKR ILELMNVEKL 240 TRENVASHLQ EKDDISFAEN ELGCDFYPLG ACM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1irz_A	4e-21	197	251	1	55	ARR10-B
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins (By similarity). Functions as a response regulator in response to cytokinins (PubMed:22383541). {ECO:0000250\|UniProtKB:Q940D0, ECO:0000269\|PubMed:22383541}.
UniProt	Transcriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250\|UniProtKB:Q940D0}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc02336.1.g00060.1.sm.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004964668.1	1e-154	two-component response regulator ORR22
Swissprot	B8B3I4	1e-144	ORR22_ORYSI; Two-component response regulator ORR22
Swissprot	Q5SML5	1e-144	ORR22_ORYSJ; Two-component response regulator ORR22
TrEMBL	A0A0A9CW65	1e-154	A0A0A9CW65_ARUDO; Two-component response regulator
STRING	Pavir.Da02067.1.p	1e-154	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1856	38	94

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G25180.1	1e-102	response regulator 12

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]