PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc02310.1.g00070.1.sm.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WRKY
Protein Properties Length: 360aa    MW: 39647.5 Da    PI: 7.7474
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc02310.1.g00070.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.72.1e-32108164259
                                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                     dDgynWrKYGqK vkg e+prsYY+Ct+++Cpvkkkversa d+++++i+Y+g+Hnh+
  Zpz_sc02310.1.g00070.1.sm.mkhc 108 DDGYNWRKYGQKAVKGGEYPRSYYKCTHSSCPVKKKVERSA-DGQITQIIYRGQHNHH 164
                                     8****************************************.***************7 PP
2WRKY104.74.8e-33277335159
                                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                     ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC vkk++ers++dpk+v++tYeg+H h+
  Zpz_sc02310.1.g00070.1.sm.mkhc 277 LDDGYRWRKYGQKVVKGNPHPRSYYKCTYQGCDVKKHIERSSQDPKAVITTYEGKHSHD 335
                                     59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.1E-2999166IPR003657WRKY domain
PROSITE profilePS5081124.443102166IPR003657WRKY domain
SuperFamilySSF1182906.28E-26105166IPR003657WRKY domain
SMARTSM007746.9E-34107165IPR003657WRKY domain
PfamPF031067.0E-25108164IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.0E-36264337IPR003657WRKY domain
SuperFamilySSF1182902.35E-29269337IPR003657WRKY domain
PROSITE profilePS5081137.172272337IPR003657WRKY domain
SMARTSM007741.0E-38277336IPR003657WRKY domain
PfamPF031061.1E-25278335IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MSWLIFVFII LFLQGTFEMS HQQALAQVTA QAVHSPYNIV NQTDYSVPFS STTTPPLTSQ  60
NVNSSANLVS TSTKMVPTQP SHTGNTNIQS NEISQLQNSA LTADKPADDG YNWRKYGQKA  120
VKGGEYPRSY YKCTHSSCPV KKKVERSADG QITQIIYRGQ HNHHRPPKRR SKDGGELLNN  180
GDDFDEKNED AQTRSEPGIH DHSGKVEASS DGPAGPSMSK RGEGSGPLSG SSDSEDDADD  240
EARADHGDAG PANANRRRVP TPAQRIIVQT NSEVDLLDDG YRWRKYGQKV VKGNPHPRSY  300
YKCTYQGCDV KKHIERSSQD PKAVITTYEG KHSHDVPAAR NSSHAAANVI FNALDISYLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-38108338878Probable WRKY transcription factor 4
2lex_A5e-38108338878Probable WRKY transcription factor 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1164169RPPKRR
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc02310.1.g00070.1.sm.mkhc
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002467677.20.0probable WRKY transcription factor 4
SwissprotQ9ZQ706e-94WRKY3_ARATH; Probable WRKY transcription factor 3
TrEMBLC5WVP70.0C5WVP7_SORBI; Uncharacterized protein
STRINGSb01g032120.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134538122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.18e-84WRKY DNA-binding protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]