PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc02268.1.g00060.1.sm.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GRAS
Protein Properties Length: 731aa    MW: 82149.7 Da    PI: 6.6379
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc02268.1.g00060.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS394.41.3e-1203567271374
                          GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaal 81 
                                   l++ L++cA+av+++d + a++lL+++++++ p+gd +qRla++f+ +L+arla+++s+ly++l +++t+    s+ l+a+
  Zpz_sc02268.1.g00060.1.sm.mk 356 LRTILIQCAQAVAADDRRSASELLKQIRQHSKPNGDGTQRLAHCFADGLEARLAGTGSQLYHQLVAKRTT---ASDMLKAY 433
                                   5789************************************************************999999...9******* PP

                          GRAS  82 klfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeelee 160
                                   +l+  ++P+ ++sh++ Nq+Il  ++++++vHiiDf+i  G+QWp+L++ L++R++gpp lRiTg++ p++g   +e++ee
  Zpz_sc02268.1.g00060.1.sm.mk 434 HLYLAACPFKRLSHFLSNQTILSMIKNATKVHIIDFGIYFGFQWPCLIRRLSKREGGPPLLRITGIDVPQPGfrPTERIEE 514
                                   ***********************************************************************9********* PP

                          GRAS 161 tgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvv 241
                                   tg+rLa++A+++ vpfe++  +a+++e+++ e+L+v ++E+++Vn+ ++  +l de+v+++s+r++vL+++++++P ++++
  Zpz_sc02268.1.g00060.1.sm.mk 515 TGHRLAEYARKFAVPFEYQG-IASKWETIRAEDLKVGKDEVVIVNCLYRFRNLIDETVAVDSPRNRVLNTIRQVNPAIFIH 594
                                   ********************.7*********************************************************** PP

                          GRAS 242 veqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleea 322
                                      + +++ + F +rf eal ++salfd+lea++pr++ +r+ +Er l+gre+ nv+aceg++r+er et+++W+ r  +a
  Zpz_sc02268.1.g00060.1.sm.mk 595 GIVNGSYSVPFFITRFREALFHFSALFDMLEATVPRDDAQRALIERDLFGREALNVIACEGSDRVERPETYKQWQVRNLRA 675
                                   ********************************************************************************* PP

                          GRAS 323 GFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                   GF ++pls++++++ak+ ++ ++ + + ++e+sg+l++gWk+r ++++SaW+
  Zpz_sc02268.1.g00060.1.sm.mk 676 GFVQAPLSQDIVTKAKAKVKDIYHKDFVIDEDSGWLLQGWKGRIIYAMSAWK 727
                                   ***********************888*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098568.838330707IPR005202Transcription factor GRAS
PfamPF035144.3E-118356727IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 731 aa     Download sequence    Send to blast
MGLDNTYGEL SGMFCGGLSY DGFTDRSGSS DYFSFLNSQP EIVPQIATAP SSNPSSAISR  60
TNTETDNPED WEFISDESLN YISRMLMEED IDEKVSMYQA ESAALHAAAK PFYDILGHKF  120
PPSPDHQLIP WSLDSPVESG NSSHAQSYAS TATSSIGGAV DSNRRYDIGR SEQLELYGDL  180
RVQSSLPVLG PSSDACNEVS VLEDPLITNG RIPDYLFESL PTWDFRRGAE KAQKFLSGSD  240
KLVIDLEAGG VARPKEESKN VSPSTRKAEV LNTKKNRQSE DLDVLEGRSI KQSAFSSEEP  300
DWIEMFDDLL TEKKATVLRE MMRNEASKNS QVTQTKAPSG PRQRGRKPTK RDVVDLRTIL  360
IQCAQAVAAD DRRSASELLK QIRQHSKPNG DGTQRLAHCF ADGLEARLAG TGSQLYHQLV  420
AKRTTASDML KAYHLYLAAC PFKRLSHFLS NQTILSMIKN ATKVHIIDFG IYFGFQWPCL  480
IRRLSKREGG PPLLRITGID VPQPGFRPTE RIEETGHRLA EYARKFAVPF EYQGIASKWE  540
TIRAEDLKVG KDEVVIVNCL YRFRNLIDET VAVDSPRNRV LNTIRQVNPA IFIHGIVNGS  600
YSVPFFITRF REALFHFSAL FDMLEATVPR DDAQRALIER DLFGREALNV IACEGSDRVE  660
RPETYKQWQV RNLRAGFVQA PLSQDIVTKA KAKVKDIYHK DFVIDEDSGW LLQGWKGRII  720
YAMSAWKPYK N
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A7e-513407281380Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc02268.1.g00060.1.sm.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004984720.10.0scarecrow-like protein 9
RefseqXP_004984721.10.0scarecrow-like protein 9
TrEMBLA0A3L6S7Z00.0A0A3L6S7Z0_PANMI; Scarecrow-like protein 9
STRINGPavir.J32327.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP150538118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.10.0GRAS family protein