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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Zpz_sc02258.1.g00040.1.sm.mk | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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| Family | TCP | ||||||||
| Protein Properties | Length: 102aa MW: 10696.2 Da PI: 12.4282 | ||||||||
| Description | TCP family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | TCP | 49.9 | 1.2e-15 | 4 | 40 | 37 | 73 |
TCP 37 deLGfdkdsktieWLlqqakpaikeltgtssssasec 73
+eLG+++d++tieWLl+qa+p+i+ +tgt++++as +
Zpz_sc02258.1.g00040.1.sm.mk 4 RELGHKSDGQTIEWLLRQAEPSIIVATGTGTTPASVS 40
89***************************99999555 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS51369 | 12.739 | 1 | 29 | IPR017887 | Transcription factor TCP subgroup |
| Pfam | PF03634 | 7.6E-11 | 4 | 46 | IPR005333 | Transcription factor, TCP |
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 102 aa Download sequence Send to blast |
MTPRELGHKS DGQTIEWLLR QAEPSIIVAT GTGTTPASVS TSSFSPTAVD GMPIIAAPMT 60 TPKLHPSLRR ASGRFRRGLT PLASSGASGP RLTSPSRTRR GT |
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | Zpz_sc02258.1.g00040.1.sm.mk |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_018436782.1 | 2e-17 | PREDICTED: transcription factor TCP7-like | ||||
| TrEMBL | A0A2U1L6V6 | 6e-16 | A0A2U1L6V6_ARTAN; Transcription factor, TCP | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Monocots | OGMP1941 | 33 | 100 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT5G08330.1 | 3e-20 | TCP family protein | ||||
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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