PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc02221.1.g00090.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family SBP
Protein Properties Length: 343aa    MW: 37182.9 Da    PI: 9.0778
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc02221.1.g00090.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP77.91.6e-242068250
                                  -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEE CS
                           SBP  2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfh 50
                                  C vegC+adls++++yhrrhkvCe hsk+pvv+v+g++qrfCqqCsr+ 
  Zpz_sc02221.1.g00090.1.am.mk 20 CAVEGCAADLSKCRDYHRRHKVCEEHSKTPVVIVAGQQQRFCQQCSRYA 68
                                  ***********************************************95 PP
2SBP45.71.8e-141401714778
                                   SSEEETTT--SS--S-STTTT-------S--- CS
                           SBP  47 srfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                                   s fh l efDe krsCr+rL++hn+rrrk q+
  Zpz_sc02221.1.g00090.1.am.mk 140 SSFHLLGEFDEIKRSCRKRLDGHNRRRRKVQP 171
                                   88***************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.108.9E-251267IPR004333Transcription factor, SBP-box
PROSITE profilePS5114118.8371799IPR004333Transcription factor, SBP-box
SuperFamilySSF1036124.84E-231868IPR004333Transcription factor, SBP-box
PfamPF031101.5E-172067IPR004333Transcription factor, SBP-box
PROSITE profilePS5114110.54591169IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.88E-11140173IPR004333Transcription factor, SBP-box
PfamPF031102.5E-7140168IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
SSAPAKRPRS GRAQQAVPAC AVEGCAADLS KCRDYHRRHK VCEEHSKTPV VIVAGQQQRF  60
CQQCSRYART LTGPEETLVE LAASTRARAS WASPQQRNDA AGAVELDSWV DASGRFQGSR  120
GQQIQLCSPM CVRVSLSSLS SFHLLGEFDE IKRSCRKRLD GHNRRRRKVQ PDPLNPAGLF  180
ANHHGMTRLA AYPQLFSSPS MADSKWPTTI VKTEASAFKD HYNPAFHLGN GAASIFNGKD  240
KKHFPFLTPH GDDAALGCQP FTITSSAESS SKQSNGNCAL SLLSDNQTPA QLMIPTGQPL  300
RAALQYGNAA GLSDDLGVSL AGMSYQPFLL VLQHSCNTMA TTI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj0_A1e-162067653squamosa promoter-binding protein-like 12
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc02221.1.g00090.1.am.mk
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0061674e-61AP006167.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1455F06.
GenBankAP0129184e-61AP012918.1 Oryza sativa Indica Group DNA, chromosome 1, BAC clone: K0158A04, cultivar: Kasalath, complete sequence.
GenBankAP0149574e-61AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankCP0126094e-61CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
GenBankCT8291154e-61CT829115.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA034K08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004971091.14e-83squamosa promoter-binding-like protein 2
SwissprotQ0JGI16e-48SPL2_ORYSJ; Squamosa promoter-binding-like protein 2
TrEMBLK3XIT18e-82K3XIT1_SETIT; Uncharacterized protein
STRINGGRMZM5G878561_P011e-102(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP104563038
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.11e-20SBP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]