PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc02213.1.g00140.1.sm.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family AP2
Protein Properties Length: 372aa    MW: 40929.1 Da    PI: 7.237
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc02213.1.g00140.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.82.4e-17111160155
                           AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                   s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Zpz_sc02213.1.g00140.1.sm.mk 111 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 160
                                   78*******************......55************************998 PP
2AP226.81.3e-08203241143
                           AP2   1 sgykGVrwdkkrgrWvAeIrdpseng...krkrfslgkfgtaeeAa 43 
                                   s+y+GV+ +k  grW+A+       g    +k+++lg f+++ eAa
  Zpz_sc02213.1.g00140.1.sm.mk 203 SKYRGVTLHK-CGRWEAR---M---GqllGKKYVYLGLFDSEIEAA 241
                                   89********.7******...5...334336**********99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.32E-16111169IPR016177DNA-binding domain
PfamPF008471.5E-9111160IPR001471AP2/ERF domain
CDDcd000182.57E-11111170No hitNo description
SMARTSM003801.4E-32112174IPR001471AP2/ERF domain
PROSITE profilePS5103217.846112168IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.3E-17112168IPR001471AP2/ERF domain
SuperFamilySSF541712.55E-8203245IPR016177DNA-binding domain
CDDcd000183.81E-12203241No hitNo description
PfamPF008471.2E-4203241IPR001471AP2/ERF domain
SMARTSM003807.4E-6204253IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.1E-5204242IPR001471AP2/ERF domain
PROSITE profilePS510328.821204245IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MVLDLNVESP ADSGTSSSSV LNSGDGGFRF DLLGSPDEED CGGEFAAPAG ASPGGFTTRQ  60
LFPVPSPPAE PEPVAAPVPV WQPRSAEDLG VAQRPVVAAK KTRRGPRSRS SQYRGVTFYR  120
RTGRWESHIW DCGKQVYLGG FDTAHAAARA YDRAAIKFRG LDADINFTLS DYEEDLKQMR  180
NWTKEEFVHI LRRQSTGFAR GSSKYRGVTL HKCGRWEARM GQLLGKKYVY LGLFDSEIEA  240
ASFTDFDKLF DLAEHMTEQP FDSMGGKLLL TLILAPIMAE ILHPTPKMRL TCDSPESSRT  300
MASQERPMER RPEPGTQSFP NWGWQGQGSP RMPLLNSAAS SGFSTAVGGA PLPSPHPPAP  360
FPDHQFYFPP KA
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition (Probable). Together with SNB, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes (PubMed:22003982). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:22003982, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc02213.1.g00140.1.sm.mk
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000269|PubMed:22003982, ECO:0000305|PubMed:20017947, ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7278380.0KJ727838.1 Zea mays clone pUT5791 AP2-EREBP transcription factor (EREB11) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025792820.11e-170AP2-like ethylene-responsive transcription factor TOE3 isoform X2
SwissprotQ84TB51e-122AP22_ORYSJ; APETALA2-like protein 2
TrEMBLA0A2T7BZ341e-169A0A2T7BZ34_9POAL; Uncharacterized protein
STRINGSi036068m1e-161(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24483890
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.21e-75AP2 family protein
Publications ? help Back to Top
  1. Lee DY,An G
    Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice.
    Plant J., 2012. 69(3): p. 445-61
    [PMID:22003982]
  2. Wang L, et al.
    Coordinated regulation of vegetative and reproductive branching in rice.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(50): p. 15504-9
    [PMID:26631749]
  3. Dai Z,Wang J,Zhu M,Miao X,Shi Z
    OsMADS1 Represses microRNA172 in Elongation of Palea/Lemma Development in Rice.
    Front Plant Sci, 2016. 7: p. 1891
    [PMID:28066457]