PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc02209.1.g00020.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 333aa    MW: 37251.1 Da    PI: 6.3751
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc02209.1.g00020.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.81.2e-1350111148
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..............TTS-HHHHHHHHHHHT CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg..............kgRtlkqcksrwqkyl 48 
                                   rg+WT +Ed+ lv++++ +G g+W++ a   g              ++Rt+k+c++rw++yl
  Zpz_sc02209.1.g00020.1.am.mk  50 RGPWTVDEDLALVNYITDHGEGRWNALAPAAGhhplfslsylhargLKRTGKSCRLRWLNYL 111
                                   89**********************************************************97 PP
2Myb_DNA-binding43.57.4e-14117157146
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                   rg +T++E++l++d++ ++G++    Ia++++ gRt++++k++w++
  Zpz_sc02209.1.g00020.1.am.mk 117 RGDFTADEHLLILDLHSRYGNR----IAQHLP-GRTDNEIKNYWRT 157
                                   899*****************99....******.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.5E-1944114IPR009057Homeodomain-like
PROSITE profilePS5129411.29245111IPR017930Myb domain
SuperFamilySSF466891.24E-2248155IPR009057Homeodomain-like
SMARTSM007171.1E-1149113IPR001005SANT/Myb domain
PfamPF002495.5E-1250111IPR001005SANT/Myb domain
CDDcd001672.41E-852111No hitNo description
PROSITE profilePS5129419.766112163IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.8E-18115162IPR009057Homeodomain-like
SMARTSM007171.0E-9116161IPR001005SANT/Myb domain
PfamPF002491.0E-11117157IPR001005SANT/Myb domain
CDDcd001674.77E-9120157No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MASSSQSSRS RTCTPAATTD AALARCPVVP FDDERNEGAH DKEERAELRR GPWTVDEDLA  60
LVNYITDHGE GRWNALAPAA GHHPLFSLSY LHARGLKRTG KSCRLRWLNY LRPDVKRGDF  120
TADEHLLILD LHSRYGNRIA QHLPGRTDNE IKNYWRTRVQ KHAKQLNCDA NSQRFKDAMR  180
YLWTPSLVDS HRFLNANAAG SDHQDDGYYL TAALSGVGVT YPSSDSLVTT TSEPHDASFP  240
ARKWGELYSY ADVRAGEETM AVSSGDWCAA RETSQQQAPG MMWPGEQKAA QAVRGAGARF  300
EDPELSGWVQ SFSEVVDATE SSFWTLDDVW KTQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-204716124126MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in the jasmonate-dependent defense responses to the rice blast fungus Magnaporthe oryzae. Does not seem to function in the salicylic acid-dependent signaling pathway. {ECO:0000269|PubMed:11310740}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc02209.1.g00020.1.am.mk
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by jasmonate (JA), wounding and infection by the fungal pathogen Magnaporthe oryzae. {ECO:0000269|PubMed:11310740}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0697441e-85BT069744.1 Zea mays full-length cDNA clone ZM_BFb0226N11 mRNA, complete cds.
GenBankKJ7276381e-85KJ727638.1 Zea mays clone pUT5565 MYB transcription factor (MYB100) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004962755.11e-100transcription factor JAMYB
SwissprotQ2QZJ88e-86JAMYB_ORYSJ; Transcription factor JAMYB
TrEMBLK3Z8G17e-99K3Z8G1_SETIT; Uncharacterized protein
STRINGPavir.Cb00499.1.p1e-99(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19838330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G48000.14e-65myb domain protein 112
Publications ? help Back to Top
  1. Ahn IP,Kim S,Kang S,Suh SC,Lee YH
    Rice Defense Mechanisms Against Cochliobolus miyabeanus and Magnaporthe grisea Are Distinct.
    Phytopathology, 2005. 95(11): p. 1248-55
    [PMID:18943354]
  2. Campos-Soriano L,García-Martínez J,San Segundo B
    The arbuscular mycorrhizal symbiosis promotes the systemic induction of regulatory defence-related genes in rice leaves and confers resistance to pathogen infection.
    Mol. Plant Pathol., 2012. 13(6): p. 579-92
    [PMID:22212404]
  3. Yokotani N, et al.
    Role of the rice transcription factor JAmyb in abiotic stress response.
    J. Plant Res., 2013. 126(1): p. 131-9
    [PMID:22847900]
  4. Wang D, et al.
    Expression analysis of innate immunity related genes in the true/field blast resistance gene-mediated defence response.
    Biotechnol. Biotechnol. Equip., 2014. 28(6): p. 999-1007
    [PMID:26740780]
  5. Fred AK,Kiswara G,Yi G,Kim KM
    Screening Rice Cultivars for Resistance to Bacterial Leaf Blight.
    J. Microbiol. Biotechnol., 2016. 26(5): p. 938-45
    [PMID:26869604]