PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc02181.1.g00060.1.sm.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 248aa    MW: 27445.9 Da    PI: 10.3417
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc02181.1.g00060.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.91.4e-1989139256
                           AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                                    y+GVr+++ +g+WvAeIr p +   r r++lg+++++e Aa a+++a+ +l+ge
  Zpz_sc02181.1.g00060.1.sm.mk  89 LYRGVRQRR-WGKWVAEIRLPQN---RVRVWLGTYDSPETAAHAYDRAAHRLRGE 139
                                   59****998.**********954...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.00E-2788146No hitNo description
Gene3DG3DSA:3.30.730.101.1E-2989146IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-2289146IPR016177DNA-binding domain
PROSITE profilePS5103222.68289146IPR001471AP2/ERF domain
SMARTSM003801.4E-3189152IPR001471AP2/ERF domain
PfamPF008471.1E-1390139IPR001471AP2/ERF domain
PRINTSPR003671.8E-990101IPR001471AP2/ERF domain
PRINTSPR003671.8E-9112128IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MDASLRTLPP ASRFPGEVRS AFSSLLLAPG ASALDTVFSH LPAPVTVPPL GSGVYHRQCE  60
LPRHFAASQP SSSSSSVATF QAPASRQKLY RGVRQRRWGK WVAEIRLPQN RVRVWLGTYD  120
SPETAAHAYD RAAHRLRGEY ARLNFPGVMD GRGDCPDDLQ PLRAAVDAKI QAIRARARRR  180
REEQRRQRFE GASQAAPTTT KVARPALSED ATTTTTTSTT PYGSLDGELP LEHMPSFDPE  240
LIWEVLNF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A8e-1885146163ATERF1
3gcc_A8e-1885146163ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18596RQKLYRGVRQRR
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc02181.1.g00060.1.sm.mk
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7282781e-105KJ728278.1 Zea mays clone pUT6557 AP2-EREBP transcription factor (EREB12) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638431.11e-97ethylene-responsive transcription factor ERF061
SwissprotQ9C7W23e-35ERF61_ARATH; Ethylene-responsive transcription factor ERF061
TrEMBLA0A0M4L9617e-98A0A0M4L961_9POAL; DREB2A
TrEMBLI1PID09e-98I1PID0_ORYGL; Uncharacterized protein
STRINGORGLA03G0412600.12e-98(Oryza glaberrima)
STRINGORGLA05G0229700.12e-98(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP88282842
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22190.11e-32ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]