PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc02161.1.g00020.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GATA
Protein Properties Length: 443aa    MW: 47504.3 Da    PI: 9.4658
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc02161.1.g00020.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA62.35.8e-2091125135
                          GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                                   C+nC tt+TplWR+gp+g+k+LCnaCG++y+k+++
  Zpz_sc02161.1.g00020.1.am.mk  91 CANCDTTSTPLWRNGPRGPKSLCNACGIRYKKEER 125
                                   ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577163.75E-1483126No hitNo description
SMARTSM004018.5E-2085135IPR000679Zinc finger, GATA-type
PROSITE profilePS5011414.69485121IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.106.5E-1789125IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.18E-1390122No hitNo description
PfamPF003201.3E-1791125IPR000679Zinc finger, GATA-type
PROSITE patternPS00344091116IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    Send to blast
MLHEAAPCTC GLLYGSCGGG CSLLFSGDHH HYYMQCDSDG AYGGSVDCTL SLGTPSTRRA  60
EAGAARPHQP NGGTHWEQSS GRQQESAARR CANCDTTSTP LWRNGPRGPK SLCNACGIRY  120
KKEERRAAAV AVAPSPTLAS VDSGMEYAAG QPQQWGWYGS AAVAKAAASS FGMFGDAGAE  180
DCLPWGIGVM PPSPAFGGVR EMPSLFQLGF ACTICFASEF RLVVSRVCVF IRINPFATQV  240
AAGRLSSTLL SLPVGAELHA TLAGPAPPLI TPRSSMYATE KTHNNAQLPA ALFRSLGTAR  300
CDYQSSTLPS ASLAARRRRR LHALYVAAVY FSVAPRRPWR LLLHPDASDS GSPTLHLKYL  360
SIRLLPQSLP RVHTSLARQT DVKLFDRLDD GTRRVRIALL VPDVAMDKLT TRPRGALAAR  420
TRHQWPVLAA PCLTGIMGTE AKR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00110ampDAPTransfer from AT2G18380Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc02161.1.g00020.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP166537102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36620.13e-21GATA transcription factor 19