PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc02155.1.g00140.1.sm.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 267aa    MW: 29664.9 Da    PI: 9.2944
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc02155.1.g00140.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.66.8e-14452148
                                  TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                                  +g+W++eEd l+ + ++++G g +W + ++t g+ R++ +c+srw++yl
  Zpz_sc02155.1.g00140.1.sm.mk  4 KGKWSKEEDRLIRNHIEKYGIGhSWQSLSNTSGLQRCGRSCRSRWLNYL 52
                                  79*********************************************97 PP

2Myb_DNA-binding36.71e-1159102247
                                   SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                   g++T+ Ed+ + +   ++G+  W+ Ia+ ++ gRt+  +k++w++ 
  Zpz_sc02155.1.g00140.1.sm.mk  59 GNFTPAEDKVICEMYSKMGSC-WSVIAAQLP-GRTDLAIKNYWNST 102
                                   89*******************.*********.***********986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129421.573156IPR017930Myb domain
SuperFamilySSF466891.76E-26299IPR009057Homeodomain-like
SMARTSM007171.3E-8354IPR001005SANT/Myb domain
PfamPF002494.8E-11452IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.6E-19559IPR009057Homeodomain-like
CDDcd001678.00E-8652No hitNo description
PROSITE profilePS5129415.05957107IPR017930Myb domain
SMARTSM007171.4E-1157105IPR001005SANT/Myb domain
PfamPF002492.1E-1059102IPR001005SANT/Myb domain
CDDcd001672.14E-860103No hitNo description
Gene3DG3DSA:1.10.10.602.3E-2260106IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MRKKGKWSKE EDRLIRNHIE KYGIGHSWQS LSNTSGLQRC GRSCRSRWLN YLRPGLKHGN  60
FTPAEDKVIC EMYSKMGSCW SVIAAQLPGR TDLAIKNYWN STLKKRFRGV RTAARRRPRP  120
SPTASTSSDA RTPAQDLQLI VYSEESSTAG SSCAKPVLPS SPTSAKAVKL LAPVAAGREP  180
IEAVPVRANA PVRTEQKPSV ESLPLMTPTA PPPPADRRDH TDQSDEMAMD IISMPMSPIP  240
LEFMDLELAC ICGFDDIDNF LPWFDGH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C4e-23410727128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc02155.1.g00140.1.sm.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014661280.11e-107transcription factor RAX2
TrEMBLA0A368SIM71e-105A0A368SIM7_SETIT; Uncharacterized protein
STRINGPavir.J36491.1.p4e-97(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122282638
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37780.11e-43myb domain protein 87