PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc02106.1.g00050.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NF-X1
Protein Properties Length: 1184aa    MW: 127762 Da    PI: 8.21
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc02106.1.g00050.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X1186.4e-06454471118
                      zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                                   CG+H+C+  CH+GpC++C
  Zpz_sc02106.1.g00050.1.am.mk 454 CGNHSCKDMCHPGPCGEC 471
                                   ****************** PP
2zf-NF-X121.64.7e-07512529118
                      zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                                   CG H+C+ +CHeG+CppC
  Zpz_sc02106.1.g00050.1.am.mk 512 CGVHRCKVTCHEGECPPC 529
                                   ****************** PP
3zf-NF-X116.22.4e-05607625119
                      zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                                   CG+H Cq lCH G CppC 
  Zpz_sc02106.1.g00050.1.am.mk 607 CGQHVCQLLCHSGHCPPCL 625
                                   ******************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578507.77E-7210283No hitNo description
PROSITE profilePS500168.76217279IPR019787Zinc finger, PHD-finger
PROSITE patternPS013590220276IPR019786Zinc finger, PHD-type, conserved site
PROSITE profilePS500899.406220277IPR001841Zinc finger, RING-type
CDDcd060081.32E-4310373No hitNo description
SMARTSM004380.023335353IPR000967Zinc finger, NF-X1-type
PfamPF014228.9337352IPR000967Zinc finger, NF-X1-type
CDDcd060082.27E-12380428No hitNo description
SMARTSM004380.0022390409IPR000967Zinc finger, NF-X1-type
PfamPF014220.001390407IPR000967Zinc finger, NF-X1-type
CDDcd060081.81E-9444487No hitNo description
SMARTSM004383.5E-4454473IPR000967Zinc finger, NF-X1-type
PfamPF014220.001454471IPR000967Zinc finger, NF-X1-type
CDDcd060082.95E-13502550No hitNo description
SMARTSM004381.3E-4512531IPR000967Zinc finger, NF-X1-type
PfamPF014226.3E-6512529IPR000967Zinc finger, NF-X1-type
CDDcd060088.49E-10597649No hitNo description
SMARTSM004381.1E-4607626IPR000967Zinc finger, NF-X1-type
PfamPF014224.4E-4607624IPR000967Zinc finger, NF-X1-type
CDDcd060081.12E-4654702No hitNo description
SMARTSM004380.34664682IPR000967Zinc finger, NF-X1-type
PfamPF0142268664680IPR000967Zinc finger, NF-X1-type
SMARTSM004380.044717752IPR000967Zinc finger, NF-X1-type
PfamPF014220.0043717732IPR000967Zinc finger, NF-X1-type
PfamPF014225.6754780IPR000967Zinc finger, NF-X1-type
SMARTSM004380.16761782IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009642Biological Processresponse to light intensity
GO:0009651Biological Processresponse to salt stress
GO:0009697Biological Processsalicylic acid biosynthetic process
GO:0010188Biological Processresponse to microbial phytotoxin
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042742Biological Processdefense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1184 aa     Download sequence    Send to blast
LRTDPLSSPD RRNRLASFHV FLPIAVLSKA LFPIKYASSH PLPSSSPPPL RRRNPSPPPT  60
PPHLYPSSPP RIPTRPAAPP PTEGAGTLGL PFPPRRRMQP SSXXXRRPNN NRRNQPPQEQ  120
SNGTGDHPRA PPATQDRNTG GGREAEDRNG DAGQNQRAAP STQDDHSGGA GHRRRGQRQE  180
RPRPAAPAPM LAPAALGGDG TVPQLVQEIQ DKLARGAVEC MICYDMVRRS APIWSCGSCY  240
SIFHLPCIRK WARSPASVAD ASPEATASAS WRCPGCQTVM SIPARDLSYT CFCGSRREPP  300
NDLFLTPHSC GEPCSKPLEK VDPGVKGEDA DATRCPHVCV LQCHPGPCPP CKAFAPDRRC  360
PCGKQIIVRR CADRSTPVTC GQPCERLLPC GRHHCEKVCH TGPCGDCAVL ISAQCFCGKK  420
KEALLCGDMM VKGKLSEEKG VFSCSEVCGH TLTCGNHSCK DMCHPGPCGE CELIPRKVTT  480
CHCGKTRLQE IRASCLDPIP TCDKVCDKKL PCGVHRCKVT CHEGECPPCL VRVEQRCRCS  540
SSGRMVECYK VSKEEFLCNK PCGRKKNCGR HRCSECCCPL SKPLAQHEGS DWDPHLCQLT  600
CGKKLRCGQH VCQLLCHSGH CPPCLETIFT DLTCACGRTS ILPPLPCGTP IPSCPHKCSV  660
PQPCGHPASH SCHFGDCPPC VVPVVRECIG GHVMLRNIPC GSKDIRCNQP CGKKRQCGIH  720
ACSRTCHPAP CDQPPADGDA SSSSGGNASC GQVCGAARKE CKHTCTAPCH PSSPCPDLRC  780
EFPVTITCSC GRITATVPCG AGGASNGDNM FEVSIIQKLP MPLQPVESNG RRVPLGQRKL  840
SCDEECAKME KKRVLAEAFD ITPPNLDALH FGENSSASDL VSDLFRREPK WVMAIEERCK  900
FLVLGKMRGN SSSSLKLHVF CHMMKDKRDA IRLIAERWKL SVQSAGWEPK RFVTIHVTPK  960
SKPPARILGS KAGAPVTAAQ PYFDPLVDMD PRLVVAMLDL PRDADVNALV LRFGGECELV  1020
WLNDKNAVAV FNDPARAATA LRRLDYGSAY QGAIMFMSNS SVQPGNVWVG TQKDGGIASK  1080
GNPWKSTASV EPSSSSGDWT GVAGHTSSSG WSGVNAAALV AGTANRWSVL ETDAATSSGR  1140
GDERMPAPHS YAAHSTTTNT GDDGPSVRKL QPEVEVDDWE EAYE
Functional Description ? help Back to Top
Source Description
UniProtMediates E2-dependent ubiquitination (By similarity). Confers resistance to osmotic stress such as high salinity. Promotes H(2)O(2) production. Negative regulator of some defense-related genes via an salicylic acid (SA)-dependent signaling pathway. Confers susceptibility to the compatible phytopathogen Pseudomonas syringae pv. tomato strain DC3000 (Pst DC3000). Mediates resistance to type A trichothecenes (phytotoxins produced by phytopathogenic fungi). {ECO:0000250, ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc02106.1.g00050.1.am.mk
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By brassinosteroids, osmotic stress and high salinity. Accumulates in response to SA, ethylene, methyl jasmonate (MeJA), flagellin (e.g. flg22), and type A trichothecenes such as T-2 toxin and diacetoxyscirpenol (DAS), but not in response to type B trichothecenes such as deoxynivalenol (DON). {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025811140.10.0NF-X1-type zinc finger protein NFXL1
SwissprotQ9SY590.0NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1
TrEMBLA0A2T7E1980.0A0A2T7E198_9POAL; Uncharacterized protein
STRINGSb10g009070.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61303543
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10170.10.0NF-X-like 1