PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc02094.1.g00020.1.sm.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 303aa    MW: 32994.2 Da    PI: 10.0229
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc02094.1.g00020.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.58.5e-15109148848
                                     HHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                 Myb_DNA-binding   8 EdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                     Ed++++d+vk++G+  W+ Ia+ ++ gR +kqc++rw+++l
  Zpz_sc02094.1.g00020.1.sm.mkhc 109 EDDKIIDLVKKYGPTKWSVIAKSLP-GRIGKQCRERWHNHL 148
                                     9************************.*************97 PP
2Myb_DNA-binding58.91.1e-18154197146
                                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
                 Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                     +++WT+eE+  l++a++ +G++ W+ Ia+ ++ gRt++++k++w++
  Zpz_sc02094.1.g00020.1.sm.mkhc 154 KDAWTPEEERALINAHRVYGNK-WAEIAKVLP-GRTDNSIKNHWNS 197
                                     689*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007175.2E-1061150IPR001005SANT/Myb domain
PROSITE profilePS5129413.64491148IPR017930Myb domain
PfamPF002491.5E-13109148IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.0E-24109155IPR009057Homeodomain-like
CDDcd001675.25E-13109148No hitNo description
SuperFamilySSF466892.62E-30127208IPR009057Homeodomain-like
PROSITE profilePS5129429.044149203IPR017930Myb domain
SMARTSM007173.4E-18153201IPR001005SANT/Myb domain
PfamPF002495.3E-17154197IPR001005SANT/Myb domain
CDDcd001677.54E-15156199No hitNo description
Gene3DG3DSA:1.10.10.602.8E-25156203IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MAEAAQVGCV ENRQPLAASS SSVSDGSSCG GGGRAGVSPP VSSSANSIPG LRRTSGPIRR  60
AKGGWTLEED DTLRTAVEAF KGQRYNACIA GKRFSTLSLS KALGLKRFED DKIIDLVKKY  120
GPTKWSVIAK SLPGRIGKQC RERWHNHLNP DIRKDAWTPE EERALINAHR VYGNKWAEIA  180
KVLPGRTDNS IKNHWNSSLK KKLDAYSTTN VLPVSKLHGR DDFKDKIKPV APGNHLDLNR  240
VSSVGSKDVP GIAHRSNMSP LSQPYKSETV KDCSAVQGLE SDSVRDKGLE IDSFHEKGIE  300
GPC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-4610920514110B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in abiotic stress responses (PubMed:17293435, PubMed:19279197). May play a regulatory role in tolerance to salt, cold, and drought stresses (PubMed:17293435). Transcriptional activator that binds specifically to a mitosis-specific activator cis-element 5'-(T/C)C(T/C)AACGG(T/C)(T/C)A-3', found in promoters of cyclin genes such as CYCB1-1 and KNOLLE (AC Q84R43). Positively regulates a subset of G2/M phase-specific genes, including CYCB1-1, CYCB2-1, CYCB2-2, and CDC20.1 in response to cold treatment (PubMed:19279197). {ECO:0000269|PubMed:17293435, ECO:0000269|PubMed:19279197}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc02094.1.g00020.1.sm.mkhc
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by cold, drought and salt stresses. {ECO:0000269|PubMed:17293435}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR5846641e-121KR584664.1 Secale cereale MYB3R1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817104.11e-129transcription factor MYB3R-2-like
SwissprotQ0JHU71e-123MB3R2_ORYSJ; Transcription factor MYB3R-2
TrEMBLA0A0D9YH521e-135A0A0D9YH52_9ORYZ; Uncharacterized protein
STRINGONIVA10G04750.11e-134(Oryza nivara)
STRINGOBART01G36770.11e-134(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30993880
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02320.26e-76myb domain protein 3r-5
Publications ? help Back to Top
  1. Kakar KU, et al.
    A consortium of rhizobacterial strains and biochemical growth elicitors improve cold and drought stress tolerance in rice (Oryza sativa L.).
    Plant Biol (Stuttg), 2016. 18(3): p. 471-83
    [PMID:26681628]