PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc02093.1.g00040.1.sm.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

NAC

Protein Properties

Length: 402aa MW: 43660.9 Da PI: 4.9188

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc02093.1.g00040.1.sm.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	37.4	7.9e-12	12	143	5	124
NAM 5 frFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..........kvkaeekewyfFskrdkkyat.gkrk 74 f F+P+d lv + L++k+ g +++ + + + d+++v P++L + + +++ ++ yfFs+++ +++ +k++ Zpz_sc02093.1.g00040.1.sm.mk 12 FMFSPSDRRLV-DILRAKIGGGDFPNAAYFVDDDVCSVRPEELVRkhskparvrsREAGDGRQFYFFSPESFVSTRtKKQR 91 89*******.88*****999888************73367777554322225568899999876655313333 PP NAM 75 nra....tksgyWkatgkdkevlskkgelvglkktLvfy.kgrapkgektdWvmh 124 +r+ + W+ g+ k v ++ g + + f+ k ++ k W+m Zpz_sc02093.1.g00040.1.sm.mk 92 KRTidrtSGNECWHGEGSGKLVDG---TNDGYMTKFSFHiKIAGETVAKPGWLMT 143 343444323445888887665543...4456666667773334555557777775 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	13.709	8	208	IPR003441	NAC domain
Pfam	PF02365	1.0E-7	12	143	IPR003441	NAC domain
SuperFamily	SSF101941	1.16E-12	12	143	IPR003441	NAC domain
SuperFamily	SSF101941	5.89E-7	148	208	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 402 aa Download sequence Send to blast
MFAFPAAEDD SFMFSPSDRR LVDILRAKIG GGDFPNAAYF VDDDVCSVRP EELVRKHSKP 60 ARVRSREAGD GRQFYFFSPE SFVSTRTKKQ RKRTIDRTSG NECWHGEGSG KLVDGTNDGY 120 MTKFSFHIKI AGETVAKPGW LMTDGNECWH GEGSGKLVDG TNDGYMTKFS FHIKIAGETV 180 AKPGWLMTEY SLKGTGAGGW VLCKIYKSPR GPGRSKAPSS LEKKRKAADD PEDARPSTKE 240 RRQGQIDANG DLEGDQPLPS GDIPSVNPTV QTVYGALTDG EVIDALAGGV TVDELIPSIT 300 EDGQPEPQVL PASFDALMHM IHPPLGVWEV PNGMRTETFE AYCRGLVGST YDVFNAQNAI 360 VQTGPGALTD GEVVAALTSD ATVDELIRST TYGIQPEPQI LL

Sequence ? help Back to Top

Protein Sequence Length: 402 aa Download sequence Send to blast

MFAFPAAEDD SFMFSPSDRR LVDILRAKIG GGDFPNAAYF VDDDVCSVRP EELVRKHSKP  60
ARVRSREAGD GRQFYFFSPE SFVSTRTKKQ RKRTIDRTSG NECWHGEGSG KLVDGTNDGY  120
MTKFSFHIKI AGETVAKPGW LMTDGNECWH GEGSGKLVDG TNDGYMTKFS FHIKIAGETV  180
AKPGWLMTEY SLKGTGAGGW VLCKIYKSPR GPGRSKAPSS LEKKRKAADD PEDARPSTKE  240
RRQGQIDANG DLEGDQPLPS GDIPSVNPTV QTVYGALTDG EVIDALAGGV TVDELIPSIT  300
EDGQPEPQVL PASFDALMHM IHPPLGVWEV PNGMRTETFE AYCRGLVGST YDVFNAQNAI  360
VQTGPGALTD GEVVAALTSD ATVDELIRST TYGIQPEPQI LL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc02093.1.g00040.1.sm.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6280	15	45