PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc02075.1.g00050.1.sm.mkhc | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | LSD | ||||||||
Protein Properties | Length: 127aa MW: 13843.9 Da PI: 9.034 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 29.7 | 1.1e-09 | 26 | 49 | 1 | 24 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdt 24 C+gC t+L Y rGA+++RC++C t Zpz_sc02075.1.g00050.1.sm.mkhc 26 CNGCPTMLVYNRGATNIRCPNCRT 49 **********************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 4.9E-10 | 24 | 51 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 3.4E-9 | 26 | 49 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 0.001 | 62 | 91 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 2.2E-6 | 65 | 89 | IPR005735 | Zinc finger, LSD1-type |
Sequence ? help Back to Top |
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Protein Sequence Length: 127 aa Download sequence Send to blast |
MPDQLYCNTF TSVNPSPARE MSELVCNGCP TMLVYNRGAT NIRCPNCRTL NSTRSGANQM 60 GQLQCGRCPT TLAYQLGAST VGCPRCRHVN PVRDARPQTV LVENPKTLDE KGKLVSNVAV 120 GVASWKR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc02075.1.g00050.1.sm.mkhc |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021320000.1 | 2e-60 | protein LOL4 isoform X3 | ||||
Refseq | XP_021320001.1 | 2e-60 | protein LOL4 isoform X3 | ||||
Swissprot | Q84UR0 | 6e-57 | LOL4_ORYSJ; Protein LOL4 | ||||
TrEMBL | C5YMW9 | 5e-58 | C5YMW9_SORBI; Uncharacterized protein | ||||
STRING | Sb07g002500.1 | 8e-59 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12333 | 29 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G20380.6 | 8e-25 | LSD family protein |
Publications ? help Back to Top | |||
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