PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc02054.1.g00100.1.sm.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB_related
Protein Properties Length: 158aa    MW: 17448.4 Da    PI: 4.4283
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc02054.1.g00100.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.62.5e-073680244
                                  SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
               Myb_DNA-binding  2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                                  g WT eE + + +a +    +   +W+ +a+ ++ gRt  ++ s++
  Zpz_sc02054.1.g00100.1.sm.mk 36 GVWTLEENKMFERALANVDWDapdRWEQVASFLP-GRTVADVASHF 80
                                  78****************99999***********.**********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007177.1E-53486IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.0E-53582IPR009057Homeodomain-like
SuperFamilySSF466894.93E-113691IPR009057Homeodomain-like
PROSITE profilePS500906.2843684IPR017877Myb-like domain
PfamPF002497.5E-63680IPR001005SANT/Myb domain
CDDcd001672.89E-53880No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    Send to blast
MMKESWMEVL PPPPAAPYFA GQAGGWLLQD RMAGGGVWTL EENKMFERAL ANVDWDAPDR  60
WEQVASFLPG RTVADVASHF DDLENDVYFI EAGLVPLPHY GAGGGGSQSA EFTFDWDAGD  120
LGFKRSCYVV GGKRGRGPDQ ERKKGVPWTE EEHKLATN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-1834114787RADIALIS
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc02054.1.g00100.1.sm.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001146624.11e-78MYB transcription factor
TrEMBLB6T0L04e-77B6T0L0_MAIZE; MYB-like transcription factor DIVARICATA
TrEMBLB7ZY893e-77B7ZY89_MAIZE; Duplicated homeodomain-like superfamily protein
STRINGGRMZM2G002128_P015e-78(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22743796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58900.11e-36Homeodomain-like transcriptional regulator