PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc02050.1.g00070.1.sm.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

M-type_MADS

Protein Properties

Length: 262aa MW: 29582.7 Da PI: 7.7935

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc02050.1.g00070.1.sm.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	38.5	1.5e-12	11	50	3	42
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 i n+s r+ tf kRrn ++KK +EL C+++v++++++ Zpz_sc02050.1.g00070.1.sm.mk 11 IANNSTRKSTFNKRRNALIKKVSELRAFCGVKVSLVVYGD 50 899***********************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	2.4E-11	1	63	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	16.722	1	50	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	4.71E-17	3	96	IPR002100	Transcription factor, MADS-box
CDD	cd00266	1.44E-18	3	89	No hit	No description
PRINTS	PR00404	4.0E-6	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	8.9E-13	11	50	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.0E-6	23	38	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 262 aa Download sequence Send to blast
MPRKKVNLQW IANNSTRKST FNKRRNALIK KVSELRAFCG VKVSLVVYGD EVDKTKPPVV 60 YPSVPEARQL LSSFKAMPDH LENWKKVTNM EEYLRGRISK LQDQKRKNAR EKQEETTLHN 120 LHKAMDGNRS AVLAGLKPEE LIKLDWLVQS KIMSVKEHFQ QFGIEPGPFQ EPLLPPPLEQ 180 PTLSTHEMQN LASVEESQPQ QHDLLAALAW NEEEIGSVVY SDLGVSNNGG AGPSNSSGGT 240 MDHYNMEGLG LPWSRDPFPN ME

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc02050.1.g00070.1.sm.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP363	36	202

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G05860.2	4e-19	M-type_MADS family protein