PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc02045.1.g00040.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family AP2
Protein Properties Length: 959aa    MW: 102061 Da    PI: 9.5244
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc02045.1.g00040.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.89.7e-12430486155
                           AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                   s+y+GV++++++gr++A+++d  + ++  ++ k  + g ++ +e+Aa+a++ a++k++g
  Zpz_sc02045.1.g00040.1.am.mk 430 SQYRGVTRHRWTGRYEAHLWDnSC-RKegQTrKGRQ-GGYDMEEKAARAYDLAALKYWG 486
                                   78*******************433.44555535555.77******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.73E-14430495No hitNo description
PfamPF008473.7E-9430486IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-11430495IPR016177DNA-binding domain
PROSITE profilePS5103216.634431496IPR001471AP2/ERF domain
SMARTSM003802.7E-19431502IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.7E-10431496IPR001471AP2/ERF domain
SMARTSM003802.1E-4520663IPR001471AP2/ERF domain
PROSITE profilePS510329.717586657IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.2E-6631657IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 959 aa     Download sequence    Send to blast
MDEAKRRYRQ LRGFWSRFSV AASREKIERK GPELQSVRYD RHHPSHRSRP RLLRSRPPAT  60
RAHSAYLSPH LARSDTDRSR PSPFKDAQLL YPGRVPDHCA VSSAMIDLSS SLLPTTSATP  120
SSSSGPAGGP RPRYEMTSNS SQNVSTCSTG GSDAAAAGGS WLGFSLSPHH MVASMDAAAG  180
GADNGVQQHY GGGLYYPPVT SSPAPFCYAL GSGQESVVTQ AAGANGGGFY PGLSSMPLRS  240
DGSLCITEAL RSGEEEQHHG VVASLASPKL EDFLGTGPAM AMSLNNSTGL YYGGDHGHSA  300
YLQPLQCAMI PGATAHDVYG HASMVDEQSA AAIAASWFVA RGVGGYDVNS TGVDAALVPA  360
AACHPLALSM SSGSGSQTSC ITMQMSAHVD PVAEYIAMEG SKKRGSTDRG AGQKQTVHRK  420
SIDTFGQRTS QYRGVTRHRW TGRYEAHLWD NSCRKEGQTR KGRQGGYDME EKAARAYDLA  480
ALKYWGTGPS THINFSLEDY REELEEMKKM TRQEYVAHLR RHHQHGRWQA RIGRVSGNKD  540
LYLGTFTLAP PQRMFALPIL AYFFAALLRV RCRQVPAPVR VSVLVTFRKA GSPQSAGSFA  600
CSIDRSRFAR LTPTAVKDRC DCRSVVVACV STQDEAAEAY DVAAIKFRGL NAVTNFDITR  660
YDVEKIMESS TLLPSELVRR RKDGDAGTAA AAITAGDDTA VANAAAALVH AGSTALDWKI  720
QAAAAALPAP ARTDEPSAQE QNHELLASEV YSAFSAQHVI VSVDADNAHG NAGAHVSNAS  780
SLSTSVNNSR EQSLDRGGLF AKPVVSAASK LSCPPLPLGS WVSPSPVSAR PAMSVAHLPM  840
FAAWTDAALT DRLPSIPVRF SGSSARSNSP NFSRARVTPP GRAIPAAQAL ISEALSCSAK  900
LAALLGTVSV RDPRRARRLA TPGGEDGGLT GPRPRPRLYS GGLDVRFTTG ASLAPPSRS
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc02045.1.g00040.1.am.mk
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3753189e-83AK375318.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3090N20.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796942.10.0AP2-like ethylene-responsive transcription factor CRL5
TrEMBLA0A1D6L6650.0A0A1D6L665_MAIZE; AP2-like ethylene-responsive transcription factor ANT
STRINGPavir.J24038.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP94838133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.11e-74AP2 family protein