PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc02040.1.g00010.1.sm.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB_related
Protein Properties Length: 879aa    MW: 94457 Da    PI: 8.0495
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc02040.1.g00010.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.21.9e-08844878238
                                   SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HH CS
               Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlk 38 
                                   ++WT eE +ll+++++++  + W+ Ia ++g +++  
  Zpz_sc02040.1.g00010.1.sm.mk 844 DKWTDEETLLLLEGIEKYNDD-WDDIAGHVG-TKSKA 878
                                   69****************988.*********.98875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.40.201.2E-5461412IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484031.25E-4066391IPR020683Ankyrin repeat-containing domain
SMARTSM002487.275104IPR002110Ankyrin repeat
PROSITE profilePS5029743.79575404IPR020683Ankyrin repeat-containing domain
CDDcd002049.23E-1775196No hitNo description
CDDcd002042.10E-19139263No hitNo description
SMARTSM00248170142175IPR002110Ankyrin repeat
PROSITE profilePS500888.523142175IPR002110Ankyrin repeat
SMARTSM00248220176205IPR002110Ankyrin repeat
PfamPF127964.0E-10214300IPR020683Ankyrin repeat-containing domain
CDDcd002041.08E-21240369No hitNo description
SMARTSM002480.0045242271IPR002110Ankyrin repeat
PROSITE profilePS5008810.553242264IPR002110Ankyrin repeat
SMARTSM00248220278310IPR002110Ankyrin repeat
SMARTSM002481600312344IPR002110Ankyrin repeat
PfamPF138576.8E-7342390No hitNo description
SMARTSM002480.45348377IPR002110Ankyrin repeat
PROSITE profilePS5008810.793348372IPR002110Ankyrin repeat
PfamPF139623.2E-16432530IPR026961PGG domain
PROSITE profilePS5129318.286841879IPR017884SANT domain
SuperFamilySSF466892.65E-7841878IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.0E-5844878IPR009057Homeodomain-like
PfamPF002498.2E-8844879IPR001005SANT/Myb domain
CDDcd001671.03E-6845879No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 879 aa     Download sequence    Send to blast
MDQQQHVQLS HPWHHGSSTT PTTQPKDADD SARLIDMCPP LYRAAHKGRA QEHPVPPVPG  60
VVQHGRCDVP EATAEGNTVL HVAAERGHDE LIREICLRFR EKKGLLSRRN SALDTPLHRA  120
ARAGRVDTER GEEGVVGCKN EAGDTALHQA ASHGHGTTVE ALLVSAEATA SELNAAGVSP  180
MYLAAMSGSV QAVRAIATTR RDASAAGPGA QNALHAAVFQ SAEMVNLLLE WRPALAGEAD  240
RDGSTPLHLA VSDGHRSVVR AILRAAPPRT AYRKDHAGGL SALHVAARMG PDRVVGELLR  300
SCPHAGELRD DGGATFLHAA AREKRASVVS LAIKDPTLRG LLDARGRDGN TPLHLAAPAG  360
APRVAETLLR KGKVRADVLN VDGHTPFDLA EKSTSFFTMV NLVLILVAFR AQSRPQRQDH  420
LKPWSGRDIG QGIEKTSDSL AVVAVLIATG FQVPGGYGDD GTANLKDKPA FTIFMVLIIF  480
AAATSVVTVI LLGFGKASRS NGWWKSFAMA LHGFWVSLNC LMLAFYTDIT VVSNISNRIV  540
LLTIFIFIQL LTYWITVRIA PVTKSFTDLS RCNTRQHAII KRQYPFAAAS RVACSPAGHS  600
LPLTCFPYFP VGLFRAPLAA VVLRRPQPTM PRKASKASDS RLKWRKRKRN PDASPSKPSA  660
SAAVDDHSDG SDYDEDATAA PGDGANDAAA APAGTRGSED PALDLREAEV LSSVEVVSVF  720
PSAKRRVVNR PHPSVLALLD AERSAHSGDG SATSVAPAVE NISHGQLQVL SVVFPDHPSL  780
TTDPEKPSLY VCTPPPLMEG HGVPKQFDGR LHVVPKHSDW FTPGTVHRLE RQRVDGEKDG  840
SDSDKWTDEE TLLLLEGIEK YNDDWDDIAG HVGTKSKAQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6mol_A4e-25284183428Monoextended DARPin R12 (M_R12)
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc02040.1.g00010.1.sm.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0547785e-41BT054778.1 Zea mays full-length cDNA clone ZM_BFb0042C04 mRNA, complete cds.
GenBankEU9488695e-41EU948869.1 Zea mays clone 388231 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004980237.10.0protein ACCELERATED CELL DEATH 6 isoform X1
TrEMBLA0A3L6Q5D70.0A0A3L6Q5D7_PANMI; SWI/SNF complex subunit SWI3C-like
STRINGSi026089m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42933