PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc02036.1.g00060.1.sm.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WRKY
Protein Properties Length: 313aa    MW: 32164.5 Da    PI: 4.813
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc02036.1.g00060.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.71.3e-2984142259
                                     --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                                      D+++WrKYGqK++kgs+fpr+YYrC+s+ gCp++k+vers+ dp+ v++tY+ eHnh+
  Zpz_sc02036.1.g00060.1.sm.mkhc  84 TDEWAWRKYGQKPIKGSPFPRAYYRCSSSkGCPARKQVERSRLDPDKVIVTYSFEHNHS 142
                                     69*************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081130.21778144IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.5E-2980142IPR003657WRKY domain
SuperFamilySSF1182901.7E-2481142IPR003657WRKY domain
SMARTSM007744.6E-3583143IPR003657WRKY domain
PfamPF031061.7E-2585141IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MDSEWNDGAA ASSPTESGCD GKVGAGDGAS TDSPGSPVSP VAPSPTAPAA SGRRRSANKR  60
VVTVPLADVS GPRPKGVGEG NTSTDEWAWR KYGQKPIKGS PFPRAYYRCS SSKGCPARKQ  120
VERSRLDPDK VIVTYSFEHN HSGAVPRVQN RQVIPKPKAQ TVPPEPAVES VSVGNMHDVA  180
ATATAATCAG ALATGGNSGA GSVEVHDDFR WLYDGVSVTS STSPSDADAA DDMLYGSMFF  240
GAAVSTPAPL PDEFGDVGAW FGAGEAAEED AMFAGLGELP ECAMVFRRHA GDGLAMAGAG  300
MKVEQPGEGT AMT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B9e-1756141376Disease resistance protein RRS1
5w3x_D9e-1756141376Disease resistance protein RRS1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc02036.1.g00060.1.sm.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004969837.11e-119probable WRKY transcription factor 65
TrEMBLA0A3L6SUP71e-127A0A3L6SUP7_PANMI; Putative WRKY transcription factor 65
STRINGSi002365m1e-118(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP109473341
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58710.15e-36WRKY DNA-binding protein 69