PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc02028.1.g00060.1.am.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 357aa    MW: 40611.1 Da    PI: 7.7363
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc02028.1.g00060.1.am.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.21.6e-17121168148
                                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                 Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                     +g+WT++Ed++lv+ v+++G ++W+ Ia+  g++Rt+k+c++rw +yl
  Zpz_sc02028.1.g00060.1.am.mkhc 121 KGPWTEQEDLQLVCTVRLFGERRWDFIAKVSGLNRTGKSCRLRWVNYL 168
                                     79********************************************97 PP
2Myb_DNA-binding551.9e-17174219148
                                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                 Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                     rgr+T+ E+ l++++++++G++ W++Iar+++ gRt++++k++w++++
  Zpz_sc02028.1.g00060.1.am.mkhc 174 RGRMTPHEERLILELHARWGNR-WSRIARRLP-GRTDNEIKNYWRTHM 219
                                     89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.259116168IPR017930Myb domain
SMARTSM007171.9E-15120170IPR001005SANT/Myb domain
SuperFamilySSF466896.36E-29120215IPR009057Homeodomain-like
PfamPF002493.1E-16121168IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.9E-20122175IPR009057Homeodomain-like
CDDcd001673.65E-11123168No hitNo description
PROSITE profilePS5129426.495169223IPR017930Myb domain
SMARTSM007171.1E-16173221IPR001005SANT/Myb domain
PfamPF002493.9E-15174218IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.4E-24176222IPR009057Homeodomain-like
CDDcd001679.42E-12176219No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MHDFLVATQA ESRASRATRN LVCSVQVVVM EKLGPRAEQF LYDRWPSNLR PLATACRPEE  60
EKGRFVGLVV IRTGRSQALT HTAAVAAVNM AHAEEEEQED RLLADTRVYV AMVTVREETR  120
KGPWTEQEDL QLVCTVRLFG ERRWDFIAKV SGLNRTGKSC RLRWVNYLHP DLKRGRMTPH  180
EERLILELHA RWGNRWSRIA RRLPGRTDNE IKNYWRTHMR KKAQERKRNM SPSSSSSSLT  240
YQSCYRDTPP IIGAEGQELH GGSGCITSIL KGTPPDMEVY PLDQFWLEVD EPEAPHPVTG  300
FDGLKLQDLP CSSSSSLPGP LPPSAGDYYY PEACWKMDDE IKMAQQFGYS EGAGPCF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-281182221104MYB PROTO-ONCOGENE PROTEIN
1mse_C2e-281212224104C-Myb DNA-Binding Domain
1msf_C2e-281212224104C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc02028.1.g00060.1.am.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF7566681e-164JF756668.1 Saccharum hybrid cultivar Co 740 MYB transcription factor MYB14 (MYB14) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021321598.11e-139myb-related protein MYBAS2-like isoform X2
SwissprotQ4JL761e-121MYBA2_ORYSJ; Myb-related protein MYBAS2
TrEMBLA0A1B6PDJ91e-138A0A1B6PDJ9_SORBI; Uncharacterized protein
STRINGPavir.Ca02588.1.p1e-139(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63637169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59780.31e-69myb domain protein 59
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]