PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01987.1.g00010.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GRAS
Protein Properties Length: 429aa    MW: 48721.8 Da    PI: 6.2156
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01987.1.g00010.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS214.26.7e-66180427128374
                          GRAS 128 LlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnl 206
                                   L+++L + +  pp+lRiTg++  e+g    +++eetg+rLa++Ae ++vpf+++  +++r+e++++e+++++++E+l++n+
  Zpz_sc01987.1.g00010.1.am.mk 180 LIHTLQAVKVAPPKLRITGIDVLETGfhPCKTIEETGKRLAEYAELFNVPFHYHG-ISSRWENIRIEDINIDKDEVLIINC 259
                                   899999999*************99999999*************************.7************************ PP

                          GRAS 207 vlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvEr 287
                                    +++++l de+ +++s+rd+vL  vk+++P+v+++   +  ++s+ Fl rf e l y+s+lfd+l+++++r +e+ri +Er
  Zpz_sc01987.1.g00010.1.am.mk 260 LHKMKNLGDETEDMDSARDRVLCNVKKMNPEVLIIGVVNGAYSSPFFLSRFREVLFYFSSLFDMLNTTVARSHEARILIER 340
                                   ********************************************************************************* PP

                          GRAS 288 ellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLv 368
                                    llg ++ nvvacegaer+er et+++Wr+r  +aGFk++p+++ + k       k + + + ++e+ ++l++gWk+r + 
  Zpz_sc01987.1.g00010.1.am.mk 341 YLLGADVLNVVACEGAERIERPETYKQWRMRSLKAGFKQLPVNQAILKRSTEETGKSYHEDFIIDEDGDWLLQGWKGRIMH 421
                                   ************************************************9999999999888******************** PP

                          GRAS 369 svSaWr 374
                                   ++S+W+
  Zpz_sc01987.1.g00010.1.am.mk 422 ALSSWK 427
                                   *****8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098538.9320407IPR005202Transcription factor GRAS
PfamPF035142.3E-63180427IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 429 aa     Download sequence    Send to blast
MLMEDVDERV GLHQGEDVLQ AAEKPFYDIL AQLKGKKQLE KEVVDLRSLL IHCAQAVAAD  60
DRQLAKGLEA RLAGIGSIDV PRPGIDTLEG NEEVGKRLAD YANEFKKDRA CRSQEVAAVE  120
VRRGVEEAKK FVPSIEKLGI DLESNELFAS MRTAENVRKK GYGQGQDKQQ KEAVDLRALL  180
IHTLQAVKVA PPKLRITGID VLETGFHPCK TIEETGKRLA EYAELFNVPF HYHGISSRWE  240
NIRIEDINID KDEVLIINCL HKMKNLGDET EDMDSARDRV LCNVKKMNPE VLIIGVVNGA  300
YSSPFFLSRF REVLFYFSSL FDMLNTTVAR SHEARILIER YLLGADVLNV VACEGAERIE  360
RPETYKQWRM RSLKAGFKQL PVNQAILKRS TEETGKSYHE DFIIDEDGDW LLQGWKGRIM  420
HALSSWKPK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A5e-22180429146381Protein SCARECROW
5b3h_A5e-22180429145380Protein SCARECROW
5b3h_D5e-22180429145380Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01987.1.g00010.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002440450.21e-140scarecrow-like protein 9
TrEMBLA0A1B6P5S11e-139A0A1B6P5S1_SORBI; Uncharacterized protein
STRINGPavir.Ca00616.1.p1e-141(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP150538118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.12e-94GRAS family protein