PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01971.1.g00040.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GATA
Protein Properties Length: 453aa    MW: 48908.5 Da    PI: 11.639
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01971.1.g00040.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA62.93.7e-20330364135
                          GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                                   C+nCgt++TplWR+gp+g+k+LCnaCG++++k+++
  Zpz_sc01971.1.g00040.1.am.mk 330 CANCGTSSTPLWRNGPRGPKSLCNACGIRFKKEER 364
                                   ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011414.246324360IPR000679Zinc finger, GATA-type
SMARTSM004014.0E-20324376IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.95E-13326364No hitNo description
Gene3DG3DSA:3.30.50.103.1E-17328364IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.75E-13329361No hitNo description
PfamPF003207.2E-18330364IPR000679Zinc finger, GATA-type
PROSITE patternPS003440330355IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    Send to blast
MIRSREEMHD PAAIIIVVSL ISSFARTRYG ICALCASTFV QHRLGSGGWS GLLLLRACID  60
GSNAVTAGRA VTGGGGRPRL ASRTASARHV PRRRRRYAAE SYACPGRPGL NRRRTFPAEQ  120
CALMGRRRPS GHRPARARGL DTFAAATYAP VTVSEPPHGR AFLQRTRRRG SGRSGSAAAS  180
STLLTRRPMR PDRGYEFRWQ GNNASIHCTA PRDPRGRRRW RRRARRCAYA RARPLARPRG  240
RLFHGSHAFD RAGPCPCAPA RESFDAPRLS TMIEGPEPMT KHVALPPPAH PSYVAWDDVV  300
GGHQSSDYCR KPAGGAAKAG AHDAFADRRC ANCGTSSTPL WRNGPRGPKS LCNACGIRFK  360
KEERRAAATA AMENGAGASA GCGYSAQRAQ YEYAAAVARA SPCEGSFPCG GGVDADANTN  420
APFLPWRLNV VAPAPAPACV AVWPERTSLF QYN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1214224RGRRRWRRRAR
2217225RRWRRRARR
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01971.1.g00040.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP166537102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36620.15e-19GATA transcription factor 19