PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01971.1.g00010.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB_related
Protein Properties Length: 290aa    MW: 32911.5 Da    PI: 8.3556
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01971.1.g00010.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.47.9e-0996139344
                                   SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
               Myb_DNA-binding   3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 
                                    WT+   +l+ +a + + ++   +W+ Iar +g g++++++++++
  Zpz_sc01971.1.g00010.1.am.mk  96 QWTPKQNKLFEQALAVYDKDtpdRWTNIARAVG-GKSAEEVRLYY 139
                                   7********************************.**********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129310.92692147IPR017884SANT domain
SMARTSM007173.8E-893145IPR001005SANT/Myb domain
PfamPF002496.1E-795139IPR001005SANT/Myb domain
SuperFamilySSF466891.95E-1196151IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.7E-496147IPR009057Homeodomain-like
CDDcd001675.50E-797142No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
GQMLIATAQR WQQRFHSPGQ EISQRKLAFC NRMKCSSLGP IEPHVYAHHS ADGKACDESR  60
LMELTAALYC FQLPLDSRSK HDMASLSMTK PSARAQWTPK QNKLFEQALA VYDKDTPDRW  120
TNIARAVGGK SAEEVRLYYE LLEEDVKHIE SGKVPFPEYR GNAGAATGYE ADRYEYLILY  180
APFEVEAFED LTRRKEAVRE DATLRARATM ASPKRPKRLE SQSSPARRLR APHLDETSPQ  240
LSNTLPLCQG EQVIASFVRA VFCSVDLLLL VAEVARAWRF MIQSVDALFR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A3e-2786164178RADIALIS
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01971.1.g00010.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF1849214e-67KF184921.1 Saccharum hybrid cultivar R570 clone BAC 078K12 complete sequence.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27038230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.16e-26RAD-like 1