PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc01925.1.g00020.1.am.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

TCP

Protein Properties

Length: 846aa MW: 90104.4 Da PI: 11.8036

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc01925.1.g00020.1.am.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	107.7	1.8e-33	541	659	3	125
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.....ssssasec..eae 76 g+kdrhsk++T++g RdRRvRls+++a++f+dLqd+LGfd++sk+ieWL+++a ai l+ + + e++ Zpz_sc01925.1.g00020.1.am.mk 541 GGKDRHSKVYTAKGIRDRRVRLSVPTAIQFYDLQDRLGFDQPSKAIEWLINAAAGAIERLPALdpaafA------AapEPG 615 78*************************************************************444330......233233 PP TCP 77 sssssasnsssgkaaksaakskksqksaasalnlak.esrakarararer 125 + + ++ s + s+ s++s+ s l+l++ +sr + +r+r Zpz_sc01925.1.g00020.1.am.mk 616 EAATKRQQGSV------SGGSSTSETSKGSELSLSRsDSRGGGASASRDR 659 33333221111......122233333333334444444443333333333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	32.452	542	600	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	1.9E-33	542	653	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 846 aa Download sequence Send to blast
MRRSARAPDP DKVERKRKLP RAFRIGPRSL LSVIGVMRRV HDLDCMLRRC RRRGGAVGIS 60 SCSRATGSCS SLVSRRRVRV KRHADSGTVA AESGAVIEPV PSLPRENREK HVWNQHLSTC 120 SIHPSTSSRN VSPGATNGGR TSGGYRPAIS ARVFTRPTHL AGLLSSGRMP AATRRRGFPP 180 VTCLMQRKSL DQLEGGEAAA GGDCQINGGD RRTAGSSEAT CAFRFPAHIS SMPPSLPASS 240 STARSEGWMS ATPPSNEPPV AAKVAIIEGH QGHARFAMRP PAVKRPVEEQ LKKKTVGAPA 300 AAGSRYARHG SKRRTPATSP STVAIPTHPT DRLTDECARA VQRRRRCRSQ TALAVGPSEA 360 FRRRCFPLLS AAFASPQRPA REQTQSVSVS GWQCAPQETA TKRPFTAFEQ QQGRRGRRAP 420 TRRQKQGHPP GVAVATHISA AAAAAALLWH RIDRNRQAPP VHRSSSIKTP HFYERLRRAG 480 MENGAAGDGA SGRPHGGAKR GRGGVMRGSE TETAWGQPPA LPPPPQGAGT ASRICRVGRG 540 GGKDRHSKVY TAKGIRDRRV RLSVPTAIQF YDLQDRLGFD QPSKAIEWLI NAAAGAIERL 600 PALDPAAFAA APEPGEAATK RQQGSVSGGS STSETSKGSE LSLSRSDSRG GGASASRDRD 660 VTVASTSTQA ASFTELLTGA AEHRQAWQPQ PNVSAAVAHT EKGANGLSTH VFSAPTVVKF 720 GNAPPFGMVP AQPLNFPTPV EMPHFSLAQD ALAASSAPAG DYNLNFSMSS GFLGANRGTL 780 QSNPQTNFSG HHHQQLQRLE GQFLFGYAAA AAAAAHPSSE NQLNASAAIQ LWDGFRHPGM 840 KEKSKN

Sequence ? help Back to Top

Protein Sequence Length: 846 aa Download sequence Send to blast

MRRSARAPDP DKVERKRKLP RAFRIGPRSL LSVIGVMRRV HDLDCMLRRC RRRGGAVGIS  60
SCSRATGSCS SLVSRRRVRV KRHADSGTVA AESGAVIEPV PSLPRENREK HVWNQHLSTC  120
SIHPSTSSRN VSPGATNGGR TSGGYRPAIS ARVFTRPTHL AGLLSSGRMP AATRRRGFPP  180
VTCLMQRKSL DQLEGGEAAA GGDCQINGGD RRTAGSSEAT CAFRFPAHIS SMPPSLPASS  240
STARSEGWMS ATPPSNEPPV AAKVAIIEGH QGHARFAMRP PAVKRPVEEQ LKKKTVGAPA  300
AAGSRYARHG SKRRTPATSP STVAIPTHPT DRLTDECARA VQRRRRCRSQ TALAVGPSEA  360
FRRRCFPLLS AAFASPQRPA REQTQSVSVS GWQCAPQETA TKRPFTAFEQ QQGRRGRRAP  420
TRRQKQGHPP GVAVATHISA AAAAAALLWH RIDRNRQAPP VHRSSSIKTP HFYERLRRAG  480
MENGAAGDGA SGRPHGGAKR GRGGVMRGSE TETAWGQPPA LPPPPQGAGT ASRICRVGRG  540
GGKDRHSKVY TAKGIRDRRV RLSVPTAIQF YDLQDRLGFD QPSKAIEWLI NAAAGAIERL  600
PALDPAAFAA APEPGEAATK RQQGSVSGGS STSETSKGSE LSLSRSDSRG GGASASRDRD  660
VTVASTSTQA ASFTELLTGA AEHRQAWQPQ PNVSAAVAHT EKGANGLSTH VFSAPTVVKF  720
GNAPPFGMVP AQPLNFPTPV EMPHFSLAQD ALAASSAPAG DYNLNFSMSS GFLGANRGTL  780
QSNPQTNFSG HHHQQLQRLE GQFLFGYAAA AAAAAHPSSE NQLNASAAIQ LWDGFRHPGM  840
KEKSKN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	2e-23	547	601	1	55	Putative transcription factor PCF6
5zkt_B	2e-23	547	601	1	55	Putative transcription factor PCF6

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc01925.1.g00020.1.am.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3094	32	71

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30210.2	1e-29	TCP family protein