PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc01908.1.g00020.1.am.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

MYB

Protein Properties

Length: 541aa MW: 58143.4 Da PI: 10.4135

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc01908.1.g00020.1.am.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54	3.8e-17	265	312	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd+ lv +v+++G+g+W++++ g+ R+ k+c++rw +yl Zpz_sc01908.1.g00020.1.am.mk 265 KGPWTPEEDLVLVSYVQEHGPGNWRAVPTNTGLMRCSKSCRLRWTNYL 312 79********************************************97 PP
2	Myb_DNA-binding	50.3	5.5e-16	318	363	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T +E++l+v++ ++lG++ W++Ia++++ Rt++++k++w+++l Zpz_sc01908.1.g00020.1.am.mk 318 RGNFTDQEEKLIVHLQALLGNR-WAAIASYLP-ERTDNDIKNYWNTHL 363 89******************.*****.**********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.3E-23	256	315	IPR009057	Homeodomain-like
PROSITE profile	PS51294	17.846	260	312	IPR017930	Myb domain
SuperFamily	SSF46689	1.17E-29	262	359	IPR009057	Homeodomain-like
SMART	SM00717	4.0E-13	264	314	IPR001005	SANT/Myb domain
Pfam	PF00249	7.5E-16	265	312	IPR001005	SANT/Myb domain
CDD	cd00167	4.12E-11	267	312	No hit	No description
PROSITE profile	PS51294	24.722	313	367	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	7.8E-24	316	367	IPR009057	Homeodomain-like
SMART	SM00717	4.3E-16	317	365	IPR001005	SANT/Myb domain
Pfam	PF00249	1.1E-14	318	363	IPR001005	SANT/Myb domain
CDD	cd00167	1.50E-11	320	363	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 541 aa Download sequence Send to blast
MQGDRSNFQL KNKRAFRCSG TRAVPSRPDR PKTWNHSFTA DEIRPAATSR PEELQNSAGT 60 KAPSVTPRDS RAAHMSALQA ACTARRLPPH AQARAVEITV FHQDNNGKRQ DFTRTKSLVR 120 SHEASPQFIP ACARRPARGL VCFARTKQAN TVTAACARAA DASASAAVVA SLTRDAGAGV 180 SRRVFGRGSR AGSVAVPGGV CWIGRGHSQP GTRQRLYNPP ESGADRTRSV TRSRLAILAW 240 TLGVVDWEER RMGRPPCCEK GGVKKGPWTP EEDLVLVSYV QEHGPGNWRA VPTNTGLMRC 300 SKSCRLRWTN YLRPGIKRGN FTDQEEKLIV HLQALLGNRW AAIASYLPER TDNDIKNYWN 360 THLKKKLGKM SIGGEDEESK LTAPKGQWER QLQTDIHTAR QALRGALSMD TSSPAPAAKP 420 EAHAPAPVGQ ATYASSTENI ARLLEEWMRP GAGNGGKTSS GPSGSSPSAV SGEGASAASQ 480 SGAARTLEGS TGTGGKAEDR GAVVAPGPAF SMLENWLLDD GMEHGDVGIM GMPLADPCDF 540 F

Sequence ? help Back to Top

Protein Sequence Length: 541 aa Download sequence Send to blast

MQGDRSNFQL KNKRAFRCSG TRAVPSRPDR PKTWNHSFTA DEIRPAATSR PEELQNSAGT  60
KAPSVTPRDS RAAHMSALQA ACTARRLPPH AQARAVEITV FHQDNNGKRQ DFTRTKSLVR  120
SHEASPQFIP ACARRPARGL VCFARTKQAN TVTAACARAA DASASAAVVA SLTRDAGAGV  180
SRRVFGRGSR AGSVAVPGGV CWIGRGHSQP GTRQRLYNPP ESGADRTRSV TRSRLAILAW  240
TLGVVDWEER RMGRPPCCEK GGVKKGPWTP EEDLVLVSYV QEHGPGNWRA VPTNTGLMRC  300
SKSCRLRWTN YLRPGIKRGN FTDQEEKLIV HLQALLGNRW AAIASYLPER TDNDIKNYWN  360
THLKKKLGKM SIGGEDEESK LTAPKGQWER QLQTDIHTAR QALRGALSMD TSSPAPAAKP  420
EAHAPAPVGQ ATYASSTENI ARLLEEWMRP GAGNGGKTSS GPSGSSPSAV SGEGASAASQ  480
SGAARTLEGS TGTGGKAEDR GAVVAPGPAF SMLENWLLDD GMEHGDVGIM GMPLADPCDF  540
F

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1mse_C	1e-24	265	367	4	105	C-Myb DNA-Binding Domain
1msf_C	1e-24	265	367	4	105	C-Myb DNA-Binding Domain
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000305}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc01908.1.g00020.1.am.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CT837778	1e-143	CT837778.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA023K22, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003574549.1	1e-129	transcription factor MYB30
Swissprot	P81392	3e-99	MYB06_ANTMA; Myb-related protein 306
TrEMBL	A0A3L6RLD1	1e-135	A0A3L6RLD1_PANMI; Uncharacterized protein
STRING	Pavir.Fa00895.1.p	1e-141	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP229	38	296

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G74650.1	1e-90	myb domain protein 31

Publications ? help Back to Top
Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C Expression patterns of myb genes from Antirrhinum flowers. Plant Cell, 1991. 3(2): p. 115-25 [PMID:1840903]