PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01900.1.g00040.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GATA
Protein Properties Length: 734aa    MW: 78572.2 Da    PI: 9.0252
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01900.1.g00040.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA59.15.6e-19654688135
                          GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                                   Cs+Cg+ kTp+WR gp+g ktLCnaCG++y++ +l
  Zpz_sc01900.1.g00040.1.am.mk 654 CSHCGVQKTPQWRAGPEGAKTLCNACGVRYKSGRL 688
                                   *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011412.11648684IPR000679Zinc finger, GATA-type
SMARTSM004013.4E-18648702IPR000679Zinc finger, GATA-type
SuperFamilySSF577167.6E-14651711No hitNo description
Gene3DG3DSA:3.30.50.104.2E-15652686IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.44E-14653710No hitNo description
PROSITE patternPS003440654679IPR000679Zinc finger, GATA-type
PfamPF003205.9E-17654688IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 734 aa     Download sequence    Send to blast
MATVALETSS ALGMVALRGA STAEMSRPFL AIPKIAEHGA RTPPWKGDRD AGCVNAESRT  60
GGRVPARHLS HARPSDERRR SATGLWAWWD QLYLMPNSSS SSSRALNPSS SGPPAQAIEQ  120
GAAAGACRSL PPSKEPRSPV VGRDLRLPVI AQGSAAASIT QLLNTESNEI IRTAPKAALS  180
SWRAAHLVFT AARHRRQQLP AAVLSFKTDF ERRAQPRPGP TFKSLARLRD PRAMQHASHP  240
TPPDPVRNGH VCRPARSDDD SASPAAWNGA LIIQQVTCGP YENWPHLRGV HSVNEQEQQF  300
TIFGTRQVQF KSSGPAPHPT IFERTHPRTG PEFVAPFLPT CAAPAMPSYA NNHHSHMDGK  360
MDAMKSNAFP PEDAAEEAAN AAALGERDGF SVEDLLDLEE FGEPDKDETD HQDAAPPLAA  420
DETEENSPGD DSQPSSMVTF ELPPPPPEMV DLPAHDVEEE LEWVSRIMDD SLSEVPPPAQ  480
PRAVAGAAVQ AARPPLAQRM PYDSAYRALP PAPPGPPRAP TVCALSTEAL VPVKAKRSKR  540
SRSSAWSMSG ASLFSDSASS SSTATTSSCS SSSASFSPFF LLDSPPPFGF PDFEGYPHFL  600
PPLAQARKSS KHGKGSKHKP KKRGRKPKHA PQLTGAAAAS AAAASLVAQG ERRCSHCGVQ  660
KTPQWRAGPE GAKTLCNACG VRYKSGRLLP EYRPACSPTF VSSIHSNSHR KVLEMRRKKE  720
AGLLGTAAPA VASF
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01900.1.g00040.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9471368e-92EU947136.1 Zea mays clone 328769 mRNA sequence.
GenBankEU9554328e-92EU955432.1 Zea mays clone 1531924 hypothetical protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001151060.11e-135uncharacterized protein LOC100284693
TrEMBLA0A0A9D1L51e-136A0A0A9D1L5_ARUDO; Uncharacterized protein
STRINGGRMZM2G404973_P031e-126(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141733108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.21e-38GATA transcription factor 5