PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc01888.1.g00120.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | ERF | ||||||||
Protein Properties | Length: 335aa MW: 36248.6 Da PI: 5.0676 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.5 | 1.9e-19 | 129 | 180 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +y+GVr+++ +g++vAeIrdp+ +g r++lg+++ + +Aa+a+++a+ +++g+ Zpz_sc01888.1.g00120.1.am.mk 129 KYRGVRQRP-WGKYVAEIRDPKRRG--SRVWLGTYDLPIDAARAYDRAAFRMRGA 180 8********.**********96554..**************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.7E-31 | 129 | 188 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.64E-18 | 129 | 188 | No hit | No description |
SuperFamily | SSF54171 | 1.9E-21 | 129 | 188 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 22.998 | 129 | 187 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 8.3E-14 | 129 | 179 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.5E-35 | 129 | 193 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.7E-13 | 130 | 141 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.7E-13 | 169 | 189 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 335 aa Download sequence Send to blast |
MDFTGDGDDF VLNFISEHFL RNEDGFPEAG WVVSSNPSFP VQPPPAAEPA FEPMPFLPQQ 60 QQQPERYVDM THDHTGAAPA AAVAAEKFRV AQEPAPQPVM ITLESEPFSP ASSHEWAASA 120 PAPVEDFHKY RGVRQRPWGK YVAEIRDPKR RGSRVWLGTY DLPIDAARAY DRAAFRMRGA 180 KAILNFPNEV GTRGADLLAS TPASAKKRKL QQVDPDVEVV TVVNKAPSAD EVPSWTSTPL 240 SSTSSSSCIS TCQTTEIVSS TVTSTETTLV GDGADGFPGT PSSWSWEELL CGLSPHPPTG 300 GYGRRVGALG DMVQPRRCGI HLRINVTASD PVGCM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 5e-25 | 130 | 192 | 6 | 68 | ATERF1 |
3gcc_A | 5e-25 | 130 | 192 | 6 | 68 | ATERF1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc01888.1.g00120.1.am.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ727525 | 7e-72 | KJ727525.1 Zea mays clone pUT5385 AP2-EREBP transcription factor (EREB61) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021319358.1 | 6e-72 | ethylene-responsive transcription factor ERF105 | ||||
TrEMBL | A0A1B6PMF0 | 1e-70 | A0A1B6PMF0_SORBI; Uncharacterized protein | ||||
STRING | GRMZM5G805505_P01 | 8e-70 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP103 | 37 | 465 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47230.1 | 1e-20 | ethylene responsive element binding factor 5 |