PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc01865.1.g00010.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | RAV | ||||||||
Protein Properties | Length: 346aa MW: 38099.8 Da PI: 9.5406 | ||||||||
Description | RAV family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 35.5 | 2.5e-11 | 55 | 103 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+ykGV + +grW A+I++ r +r++lg+f +e Aa+a + a+++++ Zpz_sc01865.1.g00010.1.am.mk 55 SRYKGVVPQP-KGRWGAQIYE------RhARVWLGTFPDEEAAARAFDVAARRFRS 103 78****9888.7*********......44***********************9986 PP | |||||||
2 | B3 | 77.5 | 1.5e-24 | 168 | 263 | 1 | 83 |
EEEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS.....-EEEEEE..EEETTEEEE-TTHHHH CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesg.....rsWevkliyrkksgryvltkGWkeF 68 f+k+ tpsdv++++rlv+pk +ae+h + + + ++ l +ed + ++W+++++y+ +s++yvlt+GW++F Zpz_sc01865.1.g00010.1.am.mk 168 FEKAVTPSDVGRLNRLVVPKVHAEKHfpplsekdDDDDAAPVLLAFEDADPnggngKVWRFRFSYWSSSQSYVLTRGWSRF 248 89****************************99996667899999999965455888************************* PP HHHHT--TT-EEEEE CS B3 69 vkangLkegDfvvFk 83 v+++gL +gD+++F+ Zpz_sc01865.1.g00010.1.am.mk 249 VREKGLAAGDTITFS 263 **************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 3.33E-15 | 55 | 111 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 3.1E-6 | 55 | 103 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.336 | 56 | 111 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.0E-20 | 56 | 117 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.6E-19 | 56 | 111 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.0E-5 | 57 | 68 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.0E-5 | 77 | 93 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:2.40.330.10 | 4.1E-33 | 160 | 265 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.96E-26 | 163 | 263 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.06E-24 | 166 | 262 | No hit | No description |
PROSITE profile | PS50863 | 12.633 | 168 | 279 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.6E-21 | 168 | 263 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 9.1E-16 | 168 | 277 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 346 aa Download sequence Send to blast |
MYGWLYHKHQ RRRSRSSPLF QHLPLCRRTA MSTPSSTQEE AQRAGMVASQ AAPASRYKGV 60 VPQPKGRWGA QIYERHARVW LGTFPDEEAA ARAFDVAARR FRSHDAAVNF PGPADADELA 120 FLAARPKAEV VDMLRKHTYD DELRQGLRSV SGGGGVCEAD PVPRTPLFEK AVTPSDVGRL 180 NRLVVPKVHA EKHFPPLSEK DDDDDAAPVL LAFEDADPNG GNGKVWRFRF SYWSSSQSYV 240 LTRGWSRFVR EKGLAAGDTI TFSQATTPPT PTTTSADGEA YTARRLFIEC RKRKRTRTDS 300 DGSVVVDGCP VHGGDARVVR LFGANIAAAI GVHAFVEVEP QLQVGS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wid_A | 2e-37 | 167 | 266 | 13 | 104 | DNA-binding protein RAV1 |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc01865.1.g00010.1.am.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025806570.1 | 1e-112 | AP2/ERF and B3 domain-containing protein Os01g0141000-like | ||||
Swissprot | Q9AWS7 | 1e-91 | Y1407_ORYSJ; Putative AP2/ERF and B3 domain-containing protein Os01g0140700 | ||||
TrEMBL | A0A3L6R5X1 | 1e-114 | A0A3L6R5X1_PANMI; Uncharacterized protein | ||||
STRING | Traes_3B_68BFA25F1.1 | 1e-98 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP456 | 38 | 203 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G13260.1 | 2e-77 | related to ABI3/VP1 1 |