PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc01856.1.g00100.1.am.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

YABBY

Protein Properties

Length: 316aa MW: 35423.1 Da PI: 11.2388

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc01856.1.g00100.1.am.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	111.9	1.2e-34	113	264	22	162
YABBY 22 lavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaesh..ldeslkeelleelkveeenlksnv......ekeesast 94 l v vP + l+ +vtv+CGhC +l ++l+ + + ++ + l+ e+ + + ++ + v ++ + + Zpz_sc01856.1.g00100.1.am.mk 113 LQVGVPCKRLMDTVTVKCGHCNNLSYLSLRPPMVQPPSPTNhpLGPFQVERSTLNSTTHPYLFVAVVpsaapsWEKGHCND 193 7899******************988898888777766541133333333333333333333332200000022333333 PP YABBY 95 svssekl...senedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWah 162 ++++ l s + e r p v++PPek+ r Psaynrf++eeiqrika+ Pdi hreafs+aaknWa Zpz_sc01856.1.g00100.1.am.mk 194 CRRNQPLplpSPTSAEVGRRLPFVVKPPEKKHRLPSAYNRFMREEIQRIKAAKPDIPHREAFSMAAKNWAK 264 33344446644444555555666*********************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	6.7E-39	113	265	IPR006780	YABBY protein
SuperFamily	SSF47095	2.62E-8	208	266	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	4.2E-5	219	266	IPR009071	High mobility group box domain
CDD	cd01390	4.42E-5	226	267	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 316 aa Download sequence Send to blast
MCFSPSTTTF RRGIETLPHP LLEPGRPLSL FFYLPLPLPL RLTQFVTPPK KLAHQRLTHR 60 SAAVASAANH QAPSKHGFGD AVRAPVLRAL HLLQHRARGK LLERNRIRSG SRLQVGVPCK 120 RLMDTVTVKC GHCNNLSYLS LRPPMVQPPS PTNHPLGPFQ VERSTLNSTT HPYLFVAVVP 180 SAAPSWEKGH CNDCRRNQPL PLPSPTSAEV GRRLPFVVKP PEKKHRLPSA YNRFMREEIQ 240 RIKAAKPDIP HREAFSMAAK NWAKCDPRCS TAVSTASSNN APQPRLVSTP QMLLQERAKE 300 QVVESFDIFK QIERSI

Functional Description ? help Back to Top
Source	Description
UniProt	Regulates carpel specification in flower development. Severe or intermediate mutation in DL causes complete or partial homeotic conversion of carpels into stamens without affecting the identities of other floral organs. Interacts antagonistically with class B genes and controls floral meristem determinacy. Regulates midrib formation in leaves probably by inducing cell proliferation in the central region of the leaf. {ECO:0000269\|PubMed:14729915}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc01856.1.g00100.1.am.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB470268	4e-79	AB470268.1 Sorghum bicolor SbDL mRNA for DL related protein, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021307124.1	1e-102	protein DROOPING LEAF isoform X1
Swissprot	Q76EJ0	8e-87	YABDL_ORYSJ; Protein DROOPING LEAF
TrEMBL	A0A1B6QPL9	1e-101	A0A1B6QPL9_SORBI; Uncharacterized protein
STRING	Pavir.Ia04690.1.p	1e-102	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5951	36	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69180.1	3e-36	YABBY family protein