PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc01830.1.g00040.1.am.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

MYB_related

Protein Properties

Length: 732aa MW: 79798.7 Da PI: 10.911

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc01830.1.g00040.1.am.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.2	1.4e-16	332	372	5	47
-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 + E++l +d+++qlG++ W++Ia++++ gRt++++k++w+++ Zpz_sc01830.1.g00040.1.am.mk 332 SDAEEKLVIDLHAQLGNR-WSKIASHLP-GRTDNEIKNHWNTH 372 778*************.*****.**********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	22.162	323	377	IPR017930	Myb domain
SuperFamily	SSF46689	1.48E-13	325	383	IPR009057	Homeodomain-like
SMART	SM00717	5.9E-15	327	375	IPR001005	SANT/Myb domain
CDD	cd00167	4.55E-12	332	373	No hit	No description
Pfam	PF00249	2.8E-14	332	372	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	5.0E-20	332	374	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 732 aa Download sequence Send to blast
MPEFRNSSPL MEAGIDPRAA HGGRPRDPRA AHVVPFFAAG RRPRSALRSW KPALCRLRRS 60 WTSAERSAPH SRTLASCPSS LRRSHRGRSG HRLRKEGRRC VGQRSGGRQG GDAQGTRKVE 120 KGGEELAAGP FHPIQSPVPV AMNRSEGHLP ILSDSHQEHQ HQPNAFHLLI SMVGDRRRAR 180 TTQEPTSDPP TFPEQQQKGR PFCDGVAICA VNMLARCSLL AWQQKARRLS PILRGFPPDP 240 RENQPRSDTE TRRTDGTDRV KPALPSVRST TSCKNKVKVV DPSEFAITPH SVMSREAPCT 300 DKKREMPTDF VRAALRRSRI AAACRMHRGL LSDAEEKLVI DLHAQLGNRW SKIASHLPGR 360 TDNEIKNHWN THIKKKLRKM GIDPLTHKPL QPTDHHHQQQ EQLPPAEARP PKPEHQRQPT 420 PNTLTIEAAA TSSQQEEEQP PLLSKSPGFC TDEVPMIHPD EIIVPAQDDQ RLLRPTPTCA 480 TATASPPPTS YSASASSSCD EEAALFPAVD EWPDATCLMG LDDMIATAPP APWVDEWLVQ 540 PPSPVFADPC FGAYTDYQTS LLGVCVAFWS KAAGERRQAS ASGSGRRGAA RARSGAAASR 600 GRRTGSRAQR SRHTGAVAHA GAGAQGGFAW SSAHRSCAGG RRXXXXRTGS RAQRSRHTGA 660 VADAGAGAQG GFAWSSAHHS CAGGRRRSGA GRYVHARAAW LGIERARASS GGFELADASS 720 HESRAPWQKC LL

Sequence ? help Back to Top

Protein Sequence Length: 732 aa Download sequence Send to blast

MPEFRNSSPL MEAGIDPRAA HGGRPRDPRA AHVVPFFAAG RRPRSALRSW KPALCRLRRS  60
WTSAERSAPH SRTLASCPSS LRRSHRGRSG HRLRKEGRRC VGQRSGGRQG GDAQGTRKVE  120
KGGEELAAGP FHPIQSPVPV AMNRSEGHLP ILSDSHQEHQ HQPNAFHLLI SMVGDRRRAR  180
TTQEPTSDPP TFPEQQQKGR PFCDGVAICA VNMLARCSLL AWQQKARRLS PILRGFPPDP  240
RENQPRSDTE TRRTDGTDRV KPALPSVRST TSCKNKVKVV DPSEFAITPH SVMSREAPCT  300
DKKREMPTDF VRAALRRSRI AAACRMHRGL LSDAEEKLVI DLHAQLGNRW SKIASHLPGR  360
TDNEIKNHWN THIKKKLRKM GIDPLTHKPL QPTDHHHQQQ EQLPPAEARP PKPEHQRQPT  420
PNTLTIEAAA TSSQQEEEQP PLLSKSPGFC TDEVPMIHPD EIIVPAQDDQ RLLRPTPTCA  480
TATASPPPTS YSASASSSCD EEAALFPAVD EWPDATCLMG LDDMIATAPP APWVDEWLVQ  540
PPSPVFADPC FGAYTDYQTS LLGVCVAFWS KAAGERRQAS ASGSGRRGAA RARSGAAASR  600
GRRTGSRAQR SRHTGAVAHA GAGAQGGFAW SSAHRSCAGG RRXXXXRTGS RAQRSRHTGA  660
VADAGAGAQG GFAWSSAHHS CAGGRRRSGA GRYVHARAAW LGIERARASS GGFELADASS  720
HESRAPWQKC LL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc01830.1.g00040.1.am.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT033636	6e-71	BT033636.1 Zea mays full-length cDNA clone ZM_BFc0115C15 mRNA, complete cds.

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP79	38	563

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G16600.1	1e-40	myb domain protein 43