PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01818.1.g00010.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family SBP
Protein Properties Length: 367aa    MW: 39900.8 Da    PI: 8.9174
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01818.1.g00010.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP76.73.6e-2473123252
                                   -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEET CS
                           SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhel 52 
                                   C vegC+adls+ +eyh rhkvCe+hsk+pvv+v+g++qrfCqqCsr   +
  Zpz_sc01818.1.g00010.1.am.mk  73 CSVEGCTADLSKGREYHLRHKVCEAHSKTPVVVVAGQQQRFCQQCSRIDPI 123
                                   ***********************************************8765 PP
2SBP48.32.8e-152022334778
                                   SSEEETTT--SS--S-STTTT-------S--- CS
                           SBP  47 srfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                                    rfh l efDe krsCr+rL++hn+rrrk+q+
  Zpz_sc01818.1.g00010.1.am.mk 202 PRFHLLGEFDEIKRSCRKRLDGHNRRRRKPQP 233
                                   69***************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.105.6E-2565124IPR004333Transcription factor, SBP-box
PROSITE profilePS5114118.86270147IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.75E-2371124IPR004333Transcription factor, SBP-box
PfamPF031101.1E-1973124IPR004333Transcription factor, SBP-box
PROSITE profilePS5114112.81153231IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.35E-12200236IPR004333Transcription factor, SBP-box
PfamPF031101.4E-7203230IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MDWDTKMPSW DLGTVVGPSS GGGGGALDLK LGGPTSWKSA ATAAAVPPPP PSSSSAPAKR  60
PRSGQAHQAV PACSVEGCTA DLSKGREYHL RHKVCEAHSK TPVVVVAGQQ QRFCQQCSRI  120
DPIEYDRSTK PDFSAADYDS SFHGRNSKTW GLIWSCTAQR TETLVTPPFA GWLLLRARAF  180
WASPRQRNAA DAVELDFGVE PPRFHLLGEF DEIKRSCRKR LDGHNRRRRK PQPDPLNPGV  240
LFANHHGATR FASYPQLFSA ASMADPKWPA TMVKTETDVF HDHYVPAVHL NYGASSLFNG  300
KDWKHFPFLT PHGDDAAAAL GCQPFTITAS SESSSSKQNN GHRALSLLSD NQTPAQLMIP  360
TAQPLGA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj0_A4e-1673124657squamosa promoter-binding protein-like 12
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1213230KRSCRKRLDGHNRRRRKP
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01818.1.g00010.1.am.mk
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004971091.15e-76squamosa promoter-binding-like protein 2
SwissprotQ0JGI13e-47SPL2_ORYSJ; Squamosa promoter-binding-like protein 2
TrEMBLK3XIT11e-74K3XIT1_SETIT; Uncharacterized protein
STRINGGRMZM5G878561_P011e-115(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP104563038
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.17e-19SBP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]