PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01815.1.g00070.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family TCP
Protein Properties Length: 726aa    MW: 77124.2 Da    PI: 11.3823
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01815.1.g00070.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP115.28.6e-362794508134
                           TCP   8 hskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa...seceaesssssasns 85 
                                    +++h+kv+gR+RRvR+++ caar+F+L++eLG+++d++tieWLl+qa+p+i ++tg+++++a   s++ +++ssssa+ +
  Zpz_sc01815.1.g00070.1.am.mk 279 GKDRHSKVNGRGRRVRMPIVCAARVFQLTRELGLKSDGQTIEWLLRQAEPSILAATGSGTTPAvfvSSSAPSTSSSSAHYQ 359
                                   489*******************************************************88888444222333333333322 PP

                           TCP  86 ssg..........................................kaaksaakskksqksaasalnlakesrakararare 124
                                   +++                                          +  +++a++   +  +a++lnl +  +a a  ra+e
  Zpz_sc01815.1.g00070.1.am.mk 360 QQQtvlgkrpreesdatvsvaaaasafwaalptsaprsteaswgfSPLEAQATTTYVPMAQAHHLNLIAALSAGAARRAEE 440
                                   222456777888888999999999999999999999999999998555555555555555556899999999********* PP

                           TCP 125 rtrekmrikn 134
                                   +tre   i++
  Zpz_sc01815.1.g00070.1.am.mk 441 ETRETTGIRT 450
                                   ***9988876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.3E-30278365IPR005333Transcription factor, TCP
PROSITE profilePS5136927.009279333IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 726 aa     Download sequence    Send to blast
MSTVAAPSFP LVVSSLHGVS DHKSPTVTLT ANEFSVTDGN DAVRMGDPIQ LYAESELATQ  60
TRTLSKTRKA TLVARPFAPP FQHRSSEAVS LFRYDNGSQP HRQRRPLARA VDFIIPDAGV  120
SPSVGRSRHS VVTPPGLPCS RLTAATQPCV QPCTRPSRPG DGPPRGPGPH ARRQPLTPKS  180
GGASCTAPRV DVHSSGMQLG GMPSPATIWI SPLSNATRQP TGAMATRDVS TAAAAAAASM  240
FHVYQPWQVP STAVTAAATD GALAVPATTP GKKKASQGGK DRHSKVNGRG RRVRMPIVCA  300
ARVFQLTREL GLKSDGQTIE WLLRQAEPSI LAATGSGTTP AVFVSSSAPS TSSSSAHYQQ  360
QQTVLGKRPR EESDATVSVA AAASAFWAAL PTSAPRSTEA SWGFSPLEAQ ATTTYVPMAQ  420
AHHLNLIAAL SAGAARRAEE ETRETTGIRT AGEQITAMID TGESQSNSIS PRRSLFLHDT  480
SLSLCSEGKG KCGKRLRRLH PLSSLAAARP PLKTLPLRMK KGRGRCVCVC APGRFGSRTH  540
ARAYADRCNA QYSCGAALSC SPCRAPARLL TTKPAYVHRP GGARARASMD TTTPSDEAES  600
FGARDRDETG RSPPVLGAGS SRRDARSGSR CPAGAPYRTF AVRRPACRLR LVWQAAKERP  660
NFVRESRLDP ATTSRRKNTL PARHGTARRG AVLGASLECR AEQVAGADSQ LHRRPRAAVD  720
NRRCVY
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01815.1.g00070.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7276991e-103KJ727699.1 Zea mays clone pUT5638 TCP transcription factor (TCP16) gene, partial cds.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP194133100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23280.11e-30TCP family protein