PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01799.1.g00120.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 578aa    MW: 62006.7 Da    PI: 10.3344
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01799.1.g00120.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.93e-19404454256
                           AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                                    y+GVr+++ +g+WvAeIr p++   r+r +lg+f++ae+Aa a+++a+ +l+g+
  Zpz_sc01799.1.g00120.1.am.mk 404 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDSAEDAAIAYDKAAFRLRGA 454
                                   59******9.**********955...5*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.08E-29403461No hitNo description
Gene3DG3DSA:3.30.730.102.4E-31404462IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-22404461IPR016177DNA-binding domain
PROSITE profilePS5103223.037404461IPR001471AP2/ERF domain
SMARTSM003801.4E-35404467IPR001471AP2/ERF domain
PfamPF008472.3E-12405453IPR001471AP2/ERF domain
PRINTSPR003677.4E-10405416IPR001471AP2/ERF domain
PRINTSPR003677.4E-10427443IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009611Biological Processresponse to wounding
GO:0009736Biological Processcytokinin-activated signaling pathway
GO:0009873Biological Processethylene-activated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0045595Biological Processregulation of cell differentiation
GO:0071472Biological Processcellular response to salt stress
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 578 aa     Download sequence    Send to blast
MPHERISPPR HVLPLKIARA NKLRELSTRR QCPVDVLGGR PNLPLAVIRE FGAPPPFHKR  60
TVPFHIHRRR HRVADACMRS SAEHADAAPA GPGTSTPMRS NQRRHPVRGA ARRRSYPPGR  120
DLATSDRPGR AGKRLIVTGT MARVDASDER PCPGSEGVGL LGACVAPITG TVEHGSASDA  180
SASASSPTTL HTTAQHKPSL PSPPRNHQPI HFPGEAERSV PTPNPTATTR HHGGDSLLFI  240
LVMAAIDLYT NQLSSASSSS SADQELMKAL EPFIRSASPT STFTSTSPFY SYTSHATSAL  300
PQDSYHYFPA SSSYYTALPP PPAPTATSFS QLPPLPPSSS YASPATLVDG AAGLAHLSQA  360
QIQQIQTQLL AQQHQQQQRG LAASFLGPRA QLMKHPSSAA AGKLYRGVRQ RHWGKWVAEI  420
RLPRNRTRLW LGTFDSAEDA AIAYDKAAFR LRGAAARLNF PSLRRGGAHL AGPLDASVDA  480
KLAAICRSLD ASTKPRAAAH PDSPKASAST TTSEGDESVH SASSPPPLTA PSQQLQKPAP  540
PLPEMASLDF TEAPWDESAT FHLDKFPSWE IDWDAILS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-21400461163ATERF1
3gcc_A5e-21400461163ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00026PBMTransfer from AT1G78080Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01799.1.g00120.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3650404e-99AK365040.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2030H17.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008659105.11e-118ethylene-responsive transcription factor RAP2-13
TrEMBLA0A3L6PCC81e-120A0A3L6PCC8_PANMI; Ethylene-responsive transcription factor RAP2-13-like
STRINGPavir.Da01302.1.p1e-137(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38235203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.12e-36related to AP2 4