PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc01760.1.g00070.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | MYB | ||||||||
Protein Properties | Length: 531aa MW: 56361.1 Da PI: 8.7431 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 30.6 | 7.7e-10 | 80 | 115 | 1 | 37 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-H CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtl 37 rg W + Ed +l ++v+++G+ +W++Ia+++ gR++ Zpz_sc01760.1.g00070.1.am.mk 80 RGHWRPAEDAKLRELVALYGPQNWNLIAEKLD-GRSG 115 899*****************************.**98 PP | |||||||
2 | Myb_DNA-binding | 51.5 | 2.3e-16 | 165 | 207 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +++ eE+e+l a++ +G++ W+ Iar ++ gRt++ +k++w+ Zpz_sc01760.1.g00070.1.am.mk 165 RPFSDEEEERLMAAHRFYGNK-WAMIARLFP-GRTDNAVKNHWHV 207 689******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 10.455 | 75 | 130 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.03E-8 | 78 | 118 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 0.0034 | 79 | 160 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.4E-9 | 80 | 116 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.1E-22 | 81 | 114 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.94E-7 | 83 | 115 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.1E-22 | 147 | 165 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.71E-21 | 147 | 217 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 24.91 | 159 | 213 | IPR017930 | Myb domain |
SMART | SM00717 | 4.9E-13 | 163 | 211 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.4E-12 | 164 | 206 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.6E-20 | 166 | 212 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.82E-10 | 166 | 206 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 531 aa Download sequence Send to blast |
MPCSSPPPPW LLHLGSAAAD QASSSTSSRG GGRVLTGGTT TMDTGATAGG GAGGGGGVGG 60 GNAADHQESS SSGQSRLAAR GHWRPAEDAK LRELVALYGP QNWNLIAEKL DGRSGACVRV 120 PSLAFRVRFR STIPSAFCFA STDWIIGKSC RLRWFNQLDP RISKRPFSDE EEERLMAAHR 180 FYGNKWAMIA RLFPGRTDNA VKNHWHVIMA RKYREQSTAY RRRKLNQAVQ RKLEAAATAT 240 ASALPPSAAG DVVVGHHHHL LAAHDAAACF GDPYGAFALR HYCSFPFPGA AEEPLPPFCL 300 FPALARPASP LQADCSTYIH RIVVVVVVVR DMPTHNGSPH WAAHGGPVRP LLLAAMYPGV 360 NALLEIGSDG RSETMAMRHH QYGGLPPLCL LLFTLEISPS RYLDLSSVVL VCHCDVAFSS 420 LFRPSAAPAD TRLLPWQHQH QQPPPPGAAG RAVVVSGRYG PAEPPLLVPL PVPGAWMGGH 480 HLEPPFISEP AAAAAFDGGA TREGAGARFE STAAAAAAAP AFIDFLGVGA T |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-27 | 80 | 212 | 7 | 107 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc01760.1.g00070.1.am.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT041983 | 1e-105 | BT041983.1 Zea mays full-length cDNA clone ZM_BFb0095C08 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020184298.1 | 1e-109 | transcription factor MYB21-like | ||||
TrEMBL | A0A3B6FYR6 | 1e-110 | A0A3B6FYR6_WHEAT; Uncharacterized protein | ||||
STRING | Traes_3B_65172E704.1 | 1e-110 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP294 | 38 | 260 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69560.1 | 5e-63 | myb domain protein 105 |