PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01759.1.g00050.1.am.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NAC
Protein Properties Length: 339aa    MW: 37314.5 Da    PI: 10.2073
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01759.1.g00050.1.am.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM111.68.9e-353913334128
                             NAM  34 ikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgr 112
                                     ++ vd+y+++PwdLp+ ++ ++kew+f+++rd+ky++g+r+nr+t sgyWkatg d+ v +++++ +glkktLvfy g+
  Zpz_sc01759.1.g00050.1.am.mkhc  39 VNLVDLYRYDPWDLPALASIGDKEWFFYVPRDRKYRNGDRPNRVTPSGYWKATGADRMVRVEGNRSIGLKKTLVFYVGK 117
                                     5678***********888889********************************************************** PP

                             NAM 113 apkgektdWvmheyrl 128
                                     apkg +++W+m+eyrl
  Zpz_sc01759.1.g00050.1.am.mkhc 118 APKGLRSSWIMNEYRL 133
                                     **************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100541.4188153IPR003441NAC domain
SuperFamilySSF1019411.96E-4228153IPR003441NAC domain
PfamPF023657.9E-1349133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
APPVLAPPLA PINLIPPREK TATRTPRRYR PEPCWPLLVN LVDLYRYDPW DLPALASIGD  60
KEWFFYVPRD RKYRNGDRPN RVTPSGYWKA TGADRMVRVE GNRSIGLKKT LVFYVGKAPK  120
GLRSSWIMNE YRLPHGEADR YQKEISLCRV YKRPGIEDNF HLTGMTARSS GSKAAATMDK  180
KHRTSASPRL APMFDGGHSS GLMNKPYSGT NNGLTPSSVA AAAPAAVLQT SMFRSTAGSA  240
ASLSSATSTE EDGTSLYHLK GANPMLPSST HALLNANSTT MATIPIDELS RAVGSYNNNG  300
NPNQQPLPFQ GPLLPFPSME KIWDWNPLLE SPKVCPSFK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-403815348165NO APICAL MERISTEM PROTEIN
1ut4_B3e-403815348165NO APICAL MERISTEM PROTEIN
1ut7_A3e-403815348165NO APICAL MERISTEM PROTEIN
1ut7_B3e-403815348165NO APICAL MERISTEM PROTEIN
4dul_A3e-403815348165NAC domain-containing protein 19
4dul_B3e-403815348165NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01759.1.g00050.1.am.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002443756.11e-169NAC domain-containing protein 35
TrEMBLA0A1E5V4Y21e-174A0A1E5V4Y2_9POAL; NAC domain-containing protein 35
STRINGPavir.J38855.1.p1e-174(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP77063650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02450.22e-71NAC domain containing protein 35