PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01757.1.g00030.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GATA
Protein Properties Length: 404aa    MW: 42941 Da    PI: 8.0031
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01757.1.g00030.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.22.7e-19332366135
                          GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                                   Cs+Cg+ kTp+WR gp+g ktLCnaCG++y++ +l
  Zpz_sc01757.1.g00030.1.am.mk 332 CSHCGVQKTPQWRAGPEGAKTLCNACGVRYKSGRL 366
                                   *******************************9986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577168.55E-14325379No hitNo description
PROSITE profilePS5011412.057326362IPR000679Zinc finger, GATA-type
SMARTSM004016.2E-18326380IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.8E-15330364IPR013088Zinc finger, NHR/GATA-type
CDDcd002027.27E-15331373No hitNo description
PROSITE patternPS003440332357IPR000679Zinc finger, GATA-type
PfamPF003202.8E-17332366IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MTHQPISSSP PFPLLPSHFL HAPLAFPFHP LIFFFSLRLL LSAAAPAMAL FVAQHHGSLL  60
EREGRMDALR SSLRPCEAAE EVPTAAAWGA GDRGGGLFGE GFAVEDLLDL EELCEVEKDG  120
EAAPSPAVDE DKSSDSHGSS SIVSYELMPP PPPVIDLPAH DAEELEWVSR IMDDSLAELP  180
PAPHLPAASF ALRRQPEPAV PRMVPVATPT ICALSTEALV PVKAKRSKRS RGSVWSLSGA  240
APLSDSTSSS STSATSSCSS SSVSFPQLLL LDSSPFAASH LLEQAPRSKK LKHGKHGKSK  300
PKKRGRKPKH QPAAQFLGSD ASAQTPPGDR RCSHCGVQKT PQWRAGPEGA KTLCNACGVR  360
YKSGRLLPEY RPACSPTFVS GVLEMRRKEG LLVPAAIAAA VASF
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01757.1.g00030.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025798828.11e-124GATA transcription factor 6-like
TrEMBLA0A2T7F9Q41e-123A0A2T7F9Q4_9POAL; Uncharacterized protein
STRINGPavir.Ab02582.1.p1e-124(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141733108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.22e-30GATA transcription factor 5