PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc01752.1.g00080.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | TCP | ||||||||
Protein Properties | Length: 443aa MW: 46350.4 Da PI: 9.55 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 121.5 | 9.8e-38 | 58 | 204 | 2 | 131 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt................. 65 g+kdrhsk++T++g RdRRvRls+ +a++f+dLqd+LG+d++sk+ieWL+++a ai++l+++ Zpz_sc01752.1.g00080.1.sm.mk 58 SGGKDRHSKVYTAKGIRDRRVRLSVATAIQFYDLQDRLGYDQPSKAIEWLIKAAADAIDKLPSLdaaagfpshpasaagat 138 689*************************************************************77775543333322221 PP TCP 66 ssssaseceaesssssasnsssg.............kaaksaakskksqksaasalnlak.esrakarar...arertrek 129 s ++ ++ +++ + +s+ s++s+ s+l+la+ e r kar+r arer re+ Zpz_sc01752.1.g00080.1.sm.mk 139 S-----------------KDPAPadadaavadfddqGNQQRSGCSSTSETSKGSVLSLARsEGRVKARERcaqARERARER 202 1.................111112223344555554444444477777788888888888888866666666655555555 PP TCP 130 mr 131 + Zpz_sc01752.1.g00080.1.sm.mk 203 SA 204 43 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 2.1E-39 | 59 | 205 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 31.856 | 60 | 118 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009637 | Biological Process | response to blue light | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic | ||||
GO:1903508 | Biological Process | positive regulation of nucleic acid-templated transcription | ||||
GO:2000306 | Biological Process | positive regulation of photomorphogenesis |
Sequence ? help Back to Top |
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Protein Sequence Length: 443 aa Download sequence Send to blast |
MEACGGGVGE ARKRGRVKDG ETGGELPDAK RRAAALAQQP WAAQQHPASR IYRVSRASGG 60 KDRHSKVYTA KGIRDRRVRL SVATAIQFYD LQDRLGYDQP SKAIEWLIKA AADAIDKLPS 120 LDAAAGFPSH PASAAGATSK DPAPADADAA VADFDDQGNQ QRSGCSSTSE TSKGSVLSLA 180 RSEGRVKARE RCAQARERAR ERSAAAGRDK DKDPGDDGGA TGRRATATAS SFTELLTGMA 240 AAAAAAPAVA EHKQQASASW TPMTISATAD YIGFAQPRKA AGHAMAHTFA SPAPHLGNIS 300 MAPAAQHFGL SAGAVTVASG GGEPHAEMTQ FSFLQDHFMP GHAVPASGPA GDYNLNFSMS 360 SGLVGVNSRG TLQSNSQPHI SGHHHHHQQQ LQRLSTPLDA PNIPFLFSPA AAVTTPTAAD 420 TQFAAFQLWN GFHHADMKEK GKN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 5e-27 | 65 | 119 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 5e-27 | 65 | 119 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00006 | PBM | Transfer from 493022 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc01752.1.g00080.1.sm.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU190456 | 1e-134 | EU190456.1 Zea mays RFLP probe php20581 (CBM 2.10) genomic sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020396804.1 | 0.0 | transcription factor PCF6 | ||||
TrEMBL | A0A1E5W0K9 | 0.0 | A0A1E5W0K9_9POAL; Transcription factor PCF6 | ||||
STRING | Pavir.Ba03864.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3094 | 32 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18390.2 | 5e-41 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2 |