PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc01742.1.g00110.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | ERF | ||||||||
Protein Properties | Length: 305aa MW: 32614.5 Da PI: 8.0698 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.6 | 2.7e-17 | 42 | 92 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 +y+GVr+++ +gr++AeIrdp + r +lg+f+tae+Aa a++ a+++++g+ Zpz_sc01742.1.g00110.1.am.mk 42 RYRGVRRRP-WGRFAAEIRDPM----SkERRWLGTFDTAEQAACAYDVAARAMRGN 92 69*******.**********84....35999**********************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 5.62E-22 | 42 | 100 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 4.2E-35 | 42 | 105 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.3E-10 | 42 | 91 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.064 | 42 | 99 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.1E-30 | 42 | 100 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.1E-9 | 43 | 54 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.46E-22 | 49 | 101 | No hit | No description |
PRINTS | PR00367 | 3.1E-9 | 65 | 81 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 305 aa Download sequence Send to blast |
MDDAANVHLY GHVHALHHRS KRPPRAAAAV DEDGDMSPKG GRYRGVRRRP WGRFAAEIRD 60 PMSKERRWLG TFDTAEQAAC AYDVAARAMR GNKARTNFPV HATAGCWPWA PSPVAEPDHP 120 LRPFILQNLL MSSSHQGARC LLQHAGQGHG HINPAPNRMA PPSHPRSAAA SASGVMTTPG 180 AAATSSVSPP HVATLDGDDD VWDGLLKGEP PGAGLLQDAL HDFYPSTRPR GAGRKPSAVT 240 DARALTQQDW NEGFRAASPY GAEDVDEGGD CPMMPQGLLG DVIQFPAFVG FVTAPPTAPF 300 RGRSV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 6e-20 | 39 | 105 | 2 | 69 | ATERF1 |
3gcc_A | 6e-20 | 39 | 105 | 2 | 69 | ATERF1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc01742.1.g00110.1.am.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU954877 | 3e-80 | EU954877.1 Zea mays clone 1489895 AP2 domain containing protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008678756.1 | 2e-89 | ethylene-responsive transcription factor ESR2 | ||||
TrEMBL | A0A3L6F1F5 | 3e-88 | A0A3L6F1F5_MAIZE; Ethylene-responsive transcription factor ESR2 | ||||
STRING | GRMZM2G120401_P01 | 7e-89 | (Zea mays) | ||||
STRING | GRMZM2G165257_P01 | 7e-89 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7263 | 30 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G24590.1 | 5e-22 | DORNROSCHEN-like |