PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01720.1.g00130.1.sm.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GATA
Protein Properties Length: 141aa    MW: 15862.1 Da    PI: 10.4247
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01720.1.g00130.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA572.7e-182660135
                            GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                                    C+ C+ttkTplWR gp g+ +LCnaCG++yrkk++
  Zpz_sc01720.1.g00130.1.sm.mkhc 26 CTECHTTKTPLWRGGPCGPMSLCNACGIRYRKKRR 60
                                    ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577163.37E-141859No hitNo description
PROSITE profilePS5011412.4792056IPR000679Zinc finger, GATA-type
SMARTSM004019.8E-152070IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.5E-142460IPR013088Zinc finger, NHR/GATA-type
CDDcd002027.89E-142560No hitNo description
PROSITE patternPS0034402651IPR000679Zinc finger, GATA-type
PfamPF003204.6E-162660IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 141 aa     Download sequence    Send to blast
MDSSVEKGSG SLDPDERPAA GEPKACTECH TTKTPLWRGG PCGPMSLCNA CGIRYRKKRR  60
EALGLDSSKS NADQQQQQRK KTKREKEREE EGEVTVQLRS VGFGKEVVLK QRRRMRRRRR  120
LGEEERAAIL LMALSSGVVY A
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1110116QRRRMRR
2112117RRMRRR
3112119RRMRRRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01720.1.g00130.1.sm.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015631979.14e-64GATA transcription factor 16
TrEMBLA0A0D3FQY48e-63A0A0D3FQY4_9ORYZ; Uncharacterized protein
TrEMBLA0A0D9ZFB68e-63A0A0D9ZFB6_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0GVZ08e-63A0A0E0GVZ0_ORYNI; Uncharacterized protein
TrEMBLA0A0E0P3H08e-63A0A0E0P3H0_ORYRU; Uncharacterized protein
TrEMBLA2XNM38e-63A2XNM3_ORYSI; Uncharacterized protein
TrEMBLQ850Z58e-63Q850Z5_ORYSJ; Expressed protein
STRINGPavir.J03766.1.p3e-69(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24183892
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06740.17e-19GATA transcription factor 15