PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc01705.1.g00030.1.sm.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Protein Properties

Length: 272aa MW: 29570.6 Da PI: 10.3989

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc01705.1.g00030.1.sm.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	93.2	1.9e-29	35	147	1	99
EEEE-..-HHHHTT-EE--HHH.HTT............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHH CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFv 69 f+kv tpsdv+k++rlv+pk++ae++ +++ ++ l++ed+ g+ W+++++y+++s++yv+tkGW++Fv Zpz_sc01705.1.g00030.1.sm.mk 35 FEKVVTPSDVGKLNRLVIPKQHAERYfpalgpatsaaaASSEGKGLVLSFEDRAGKAWRFRYSYWNSSQSYVMTKGWSRFV 115 99****************************99999977778999******************************* PP HHHT--TT-EEEEEE-.SS.SEE..EEEEE-S CS B3 70 kangLkegDfvvFkld.gr.sefelvvkvfrk 99 k+++L +gD v F + g+ ++++++ ++r+ Zpz_sc01705.1.g00030.1.sm.mk 116 KEKRLGAGDAVEFARGvGDaARGRFFIDFRRR 147 ***********9655888999999998887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	1.2E-37	30	148	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.44E-28	32	131	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.33E-26	33	128	No hit	No description
SMART	SM01019	1.3E-20	35	148	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	13.93	35	148	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.5E-27	35	147	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 272 aa Download sequence Send to blast
MEFGRIAAVQ EDPERARGSG GGGGGVVWVE REHMFEKVVT PSDVGKLNRL VIPKQHAERY 60 FPALGPATSA AAASSEGKGL VLSFEDRAGK AWRFRYSYWN SSQSYVMTKG WSRFVKEKRL 120 GAGDAVEFAR GVGDAARGRF FIDFRRRRQD VSFLQPPALQ RLPLPSVPIC PWQDYGTYAP 180 APAPNRQVLF LRPQMPAAVV LSSVPARVAA STVEATRSKR LRLFGVNLDT PPVEDDSRVA 240 GTTSTLLQLP SPSSSTSSST AGKDICSLDL GL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5os9_A	7e-54	30	147	3	113	B3 domain-containing transcription factor NGA1
5os9_B	7e-54	30	147	3	113	B3 domain-containing transcription factor NGA1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc01705.1.g00030.1.sm.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004983810.1	1e-122	putative B3 domain-containing protein Os10g0537100
Swissprot	Q8LNN8	1e-100	Y1071_ORYSJ; Putative B3 domain-containing protein Os10g0537100
TrEMBL	A0A1E5V5B2	1e-124	A0A1E5V5B2_9POAL; Putative B3 domain-containing protein
STRING	Si039972m	1e-121	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP583	37	168

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01030.1	4e-48	B3 family protein

Publications ? help Back to Top
Rice Chromosome 10 Sequencing Consortium In-depth view of structure, activity, and evolution of rice chromosome 10. Science, 2003. 300(5625): p. 1566-9 [PMID:12791992]