PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01704.1.g00050.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family TALE
Protein Properties Length: 553aa    MW: 61783 Da    PI: 9.9117
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01704.1.g00050.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox19.51.6e-064274532955
                                   HHHHHHHHCTS-HHHHHHHHHHHHHHH CS
                      Homeobox  29 ereeLAkklgLterqVkvWFqNrRake 55 
                                   e++ LA+++gL+ +q+ +WF N+R ++
  Zpz_sc01704.1.g00050.1.am.mk 427 EKAALAESTGLDGKQINNWFINQRKRH 453
                                   6789********************885 PP
2ELK31.63.6e-11373394122
                           ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                                   ELK+ Ll+KYsgyL+sL+ E+s
  Zpz_sc01704.1.g00050.1.am.mk 373 ELKNCLLNKYSGYLSSLWRELS 394
                                   9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.4E-18177221IPR005540KNOX1
PfamPF037903.0E-20178218IPR005540KNOX1
SMARTSM012563.9E-24226277IPR005541KNOX2
PfamPF037914.0E-20230275IPR005541KNOX2
PROSITE profilePS512139.917373393IPR005539ELK domain
SMARTSM011882.8E-6373394IPR005539ELK domain
PfamPF037891.5E-8373394IPR005539ELK domain
SuperFamilySSF466897.27E-10395461IPR009057Homeodomain-like
SMARTSM003892.2E-4395460IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.605.7E-15398457IPR009057Homeodomain-like
PROSITE profilePS500719.361427456IPR001356Homeobox domain
PfamPF059202.4E-8427452IPR008422Homeobox KN domain
CDDcd000865.77E-6427456No hitNo description
PROSITE patternPS000270431454IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 553 aa     Download sequence    Send to blast
MRVKCRPVYA RRRRQLPRES RARLHVHVPS PAPPGRRRRR GSGGPASPAC WSGGRTQREK  60
TYGTGPAKHH RIRPLPCIHA RTCPPQMCSA GLRNYPRAKH LRTRPCWMPD ITVHAPSYME  120
QPLPLLASSS KSTTTPFYNA LDQRGTTETS PPAEVPTPPA PASSDPSRQS NNEGGSETIK  180
AKIMSHPLYP ALLKAFIDCR KVGAPPDVVG RLSTLAGEVE MNSNDRQEQP EDDAELDQFM  240
EMYCHMLERY RQELTRPIQE ADEFFRTMEA QIDSFSTPAT ASRRIRGRSA VRMACQGRLN  300
CSDAMFWLRM SRQDLDIDRV AIAMPGVCCV CMILYYVMFE ADDRSCEPGG GGSSEEGEQE  360
TDGLPETSDE NKELKNCLLN KYSGYLSSLW RELSRKKKKG KLPRDARQKL LHWSAPGRVV  420
SWRGELEKAA LAESTGLDGK QINNWFINQR KRHWKPAPPP MLARADYRLN PHSGGASSSS  480
AHHAALRGEG QYFAGGSSYP RGPAPRTPER DALHRRVSVH HLQPPRSSSS AHVQKCSFAV  540
DRSTSVSVNQ CVS
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01704.1.g00050.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0352053e-69BT035205.1 Zea mays full-length cDNA clone ZM_BFb0044N12 mRNA, complete cds.
GenBankBT0406223e-69BT040622.1 Zea mays full-length cDNA clone ZM_BFc0104L02 mRNA, complete cds.
GenBankKJ7275713e-69KJ727571.1 Zea mays clone pUT5431 HB transcription factor (HB110) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008644253.11e-113fused compound leaf 1 isoform X1
SwissprotQ75LX71e-100KNOS4_ORYSJ; Homeobox protein knotted-1-like 4
TrEMBLA0A1D6KYU81e-134A0A1D6KYU8_MAIZE; Homeobox protein knotted-1-like 1
STRINGGRMZM2G002225_P011e-112(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47462950
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.11e-50KNOTTED-like from Arabidopsis thaliana