PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc01684.1.g00050.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | MYB_related | ||||||||
Protein Properties | Length: 1316aa MW: 142730 Da PI: 11.5483 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 58.9 | 1.1e-18 | 375 | 430 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT..........-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg..........tWktIartmgkgRtlkqcksrwqky 47 +g+WT+eEde+lv ++k++G g W++Ia++++ gRt++++k++w+++ Zpz_sc01684.1.g00050.1.am.mk 375 KGPWTAEEDEKLVAYIKKHGQGnwrtlpknagKWSAIAARLP-GRTDNEIKNYWNTH 430 79****************************************.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 5.8E-23 | 366 | 439 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.87E-15 | 369 | 441 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 22.349 | 370 | 435 | IPR017930 | Myb domain |
SMART | SM00717 | 6.9E-19 | 374 | 433 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.6E-16 | 375 | 430 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.63E-15 | 377 | 431 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1316 aa Download sequence Send to blast |
MHGSVSRACM LVRSLADHSL VYCEAGDTCT LCYLSLSLLA YATRRGRPGE VTRPRHVRVL 60 LIGKLATLGR GTVGWTHPHA FSAGALTGVQ QLARRNAVMF YISLVADERR ARFCKSRAPA 120 GVRRANGHRR SEKLSTTSAR ALFACGAFTR AATRVVRRRG RPAGRAQSGG SGEPCMHRTQ 180 DAAGFARGVR DSGSNSSGEK VKREHILGGR ETDPSDYAPG HGVDSPSRSE AVGLWSALFC 240 SSSADVSAAN ARPAAALASR RATSGACPGS ALRSPVVHPP SPDASLSRPP WPRRARGAQR 300 PAPNPVDFAG YPSRSRAYKA GAPSHLLLDL LSSFLAAGSR RDKPGLFPHD PIRLRAGIEL 360 QMGRAPCCDK TGLKKGPWTA EEDEKLVAYI KKHGQGNWRT LPKNAGKWSA IAARLPGRTD 420 NEIKNYWNTH IRKRLLRMGI DPVTHAPRLD LLDLSGLLKP AAHAAPAYYP TQADLDALRA 480 LEPLASYPDL LRLASTLLSG TVQAPAVADQ QLLLPWLLHQ AQMTQQAAAM APQEVVPMQA 540 DHQFMQPAAS NATCQVPGLV HTNQTTIQQT RAAQQQQIQD IPAASSYVDS LLDMPALMQM 600 VQQQQSDASN MQQHWSSTAR SSNNNVGGSG VSTPSSSPVT RLSNNNSTTS TTTTYGATTT 660 NDAATLFNMP LSDLLDTAAV PLVPHHGLVS GEEKQGALRW TNVCAAFAHT QATQDTSCVS 720 TDGDRTVTTS LTCRKGIDRT DQHWHARRRP PTRPRGSTGA KQRSAAWIPA GNSYRSWSGC 780 MHLPRTGQNS GATTAAPVMC TCGVXXXXGG RDLRATPRPS LSRRPSTNHR RLTFTAALPR 840 HGSTRQQERD RRVYPRRRPR AGKGERLTLP YHHVTVSVTT FTISFLGAAL KRAAISSSRR 900 CSESLIGQEE EAEGDSGPRT ARGRPASSAK WSESERVVSR APLRRCSCLR GTAAQGRARH 960 GERLGAARFD LRAQQRRKGT EKTQKSRRRR PAAATSRRRF RRSEYIRGSV GGSKSAGRRP 1020 GACVSRCLST YRRATPPVKF PCPQPTKKAS RSRRWECFAT GARKVLFCLP RSIRQTFALR 1080 TVTRWCYSKL IVSAACVHGH RHHAAATPLS DGQTPPLSSI AELPCPCIHQ ISANPGIQGA 1140 VLVIVPGCNP SRRAFPCMPC LPLETSGLPG ERVWRRSCKA AKRQLKSQKR DIPEWIRAGV 1200 LLPMLIDGDA AVGTQTAQKQ ARGHGGNARF SHRASFSGGS TLLPQNNTRR KATIDIWASS 1260 RIPEDFHNKV AVSTAPDAQD RRMPQPATSV HVKGLVREPE GPAGKRFSFP VSTVTL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 746 | 753 | RRRPPTRP |
2 | 975 | 989 | RRKGTEKTQKSRRRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc01684.1.g00050.1.am.mk |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012615 | 4e-98 | CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence. |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP79 | 38 | 563 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G21440.1 | 4e-44 | MYB-like 102 |