PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01684.1.g00050.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB_related
Protein Properties Length: 1316aa    MW: 142730 Da    PI: 11.5483
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01684.1.g00050.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.91.1e-18375430147
                                   TSSS-HHHHHHHHHHHHHTTTT..........-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg..........tWktIartmgkgRtlkqcksrwqky 47 
                                   +g+WT+eEde+lv ++k++G g           W++Ia++++ gRt++++k++w+++
  Zpz_sc01684.1.g00050.1.am.mk 375 KGPWTAEEDEKLVAYIKKHGQGnwrtlpknagKWSAIAARLP-GRTDNEIKNYWNTH 430
                                   79****************************************.************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.8E-23366439IPR009057Homeodomain-like
SuperFamilySSF466891.87E-15369441IPR009057Homeodomain-like
PROSITE profilePS5129422.349370435IPR017930Myb domain
SMARTSM007176.9E-19374433IPR001005SANT/Myb domain
PfamPF002495.6E-16375430IPR001005SANT/Myb domain
CDDcd001679.63E-15377431No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1316 aa     Download sequence    Send to blast
MHGSVSRACM LVRSLADHSL VYCEAGDTCT LCYLSLSLLA YATRRGRPGE VTRPRHVRVL  60
LIGKLATLGR GTVGWTHPHA FSAGALTGVQ QLARRNAVMF YISLVADERR ARFCKSRAPA  120
GVRRANGHRR SEKLSTTSAR ALFACGAFTR AATRVVRRRG RPAGRAQSGG SGEPCMHRTQ  180
DAAGFARGVR DSGSNSSGEK VKREHILGGR ETDPSDYAPG HGVDSPSRSE AVGLWSALFC  240
SSSADVSAAN ARPAAALASR RATSGACPGS ALRSPVVHPP SPDASLSRPP WPRRARGAQR  300
PAPNPVDFAG YPSRSRAYKA GAPSHLLLDL LSSFLAAGSR RDKPGLFPHD PIRLRAGIEL  360
QMGRAPCCDK TGLKKGPWTA EEDEKLVAYI KKHGQGNWRT LPKNAGKWSA IAARLPGRTD  420
NEIKNYWNTH IRKRLLRMGI DPVTHAPRLD LLDLSGLLKP AAHAAPAYYP TQADLDALRA  480
LEPLASYPDL LRLASTLLSG TVQAPAVADQ QLLLPWLLHQ AQMTQQAAAM APQEVVPMQA  540
DHQFMQPAAS NATCQVPGLV HTNQTTIQQT RAAQQQQIQD IPAASSYVDS LLDMPALMQM  600
VQQQQSDASN MQQHWSSTAR SSNNNVGGSG VSTPSSSPVT RLSNNNSTTS TTTTYGATTT  660
NDAATLFNMP LSDLLDTAAV PLVPHHGLVS GEEKQGALRW TNVCAAFAHT QATQDTSCVS  720
TDGDRTVTTS LTCRKGIDRT DQHWHARRRP PTRPRGSTGA KQRSAAWIPA GNSYRSWSGC  780
MHLPRTGQNS GATTAAPVMC TCGVXXXXGG RDLRATPRPS LSRRPSTNHR RLTFTAALPR  840
HGSTRQQERD RRVYPRRRPR AGKGERLTLP YHHVTVSVTT FTISFLGAAL KRAAISSSRR  900
CSESLIGQEE EAEGDSGPRT ARGRPASSAK WSESERVVSR APLRRCSCLR GTAAQGRARH  960
GERLGAARFD LRAQQRRKGT EKTQKSRRRR PAAATSRRRF RRSEYIRGSV GGSKSAGRRP  1020
GACVSRCLST YRRATPPVKF PCPQPTKKAS RSRRWECFAT GARKVLFCLP RSIRQTFALR  1080
TVTRWCYSKL IVSAACVHGH RHHAAATPLS DGQTPPLSSI AELPCPCIHQ ISANPGIQGA  1140
VLVIVPGCNP SRRAFPCMPC LPLETSGLPG ERVWRRSCKA AKRQLKSQKR DIPEWIRAGV  1200
LLPMLIDGDA AVGTQTAQKQ ARGHGGNARF SHRASFSGGS TLLPQNNTRR KATIDIWASS  1260
RIPEDFHNKV AVSTAPDAQD RRMPQPATSV HVKGLVREPE GPAGKRFSFP VSTVTL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1746753RRRPPTRP
2975989RRKGTEKTQKSRRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01684.1.g00050.1.am.mk
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126154e-98CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7938563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21440.14e-44MYB-like 102