PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01660.1.g00020.1.sm.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WRKY
Protein Properties Length: 216aa    MW: 23029.9 Da    PI: 8.9608
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01660.1.g00020.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.12.1e-29108166159
                                   ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                          WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                   ldDg++WrKYG+K vk+s++pr+YYrC+ +gC vkk+ver+ +dp++v++tY g Hnh 
  Zpz_sc01660.1.g00020.1.sm.mk 108 LDDGFRWRKYGKKAVKSSPNPRNYYRCAAEGCGVKKRVERDCDDPSYVVTTYDGVHNHA 166
                                   59********************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.2E-3096166IPR003657WRKY domain
SuperFamilySSF1182901.57E-26100166IPR003657WRKY domain
PROSITE profilePS5081129.413103168IPR003657WRKY domain
SMARTSM007744.4E-33108167IPR003657WRKY domain
PfamPF031061.6E-23109165IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MAASLGLYFP PDDLVVANNC AAAMHFLPSA IAVAADDFCP KLGVHPPPDY YYSPPQQVFA  60
GNEMNMRFAD DGRMTTTMRM SRAAGTGTGS RPSPSRIGFR TRSKVDVLDD GFRWRKYGKK  120
AVKSSPNPRN YYRCAAEGCG VKKRVERDCD DPSYVVTTYD GVHNHAAGRR QALAPYGAAA  180
TSACAPAGLA AGAPPSDVWG GVQVHAAAAR SSESSY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-2698165774Probable WRKY transcription factor 4
2lex_A3e-2698165774Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01660.1.g00020.1.sm.mk
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU0586131e-90KU058613.1 UNVERIFIED: Panicum miliaceum WRKY28-like gene, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025818051.11e-55WRKY transcription factor WRKY24-like
TrEMBLA0A3L6SK853e-54A0A3L6SK85_PANMI; Putative WRKY transcription factor 58
STRINGPavir.Ea00274.1.p1e-56(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44137206
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64810.19e-39WRKY DNA-binding protein 51