PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01627.1.g00170.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 288aa    MW: 31430.9 Da    PI: 6.2337
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01627.1.g00170.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.77.4e-101880148
                                  TSSS-HHHHHHHHHHHHHTTTT...........-HHHHHHHHT....TTS-HHHHHHHHHHHT CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg...........tWktIartmg....kgRtlkqcksrwqkyl 48
                                  +g W++eEde+l++ + ++G             + +t a  ++    + R++k+c++rw +yl
  Zpz_sc01627.1.g00170.1.am.mk 18 KGLWSPEEDEKLYNHIIRYGALpltqhdtvcmpSLATLALLINanawLQRCGKSCRLRWINYL 80
                                  678*****************99***************************************97 PP
2Myb_DNA-binding48.12.8e-1586130147
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                   rg+++++E++ +v +++ lG++ W+ Ia++++ gRt++++k++w++ 
  Zpz_sc01627.1.g00170.1.am.mk  86 RGSFSQQEEDAIVGLHEILGNR-WSQIASHLP-GRTDNEIKNFWNSC 130
                                   899*******************.*********.***********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.7E-141383IPR009057Homeodomain-like
PROSITE profilePS500907.9331380IPR017877Myb-like domain
SMARTSM007171.5E-41782IPR001005SANT/Myb domain
PfamPF002498.7E-81880IPR001005SANT/Myb domain
CDDcd001671.86E-42180No hitNo description
SuperFamilySSF466891.49E-2066140IPR009057Homeodomain-like
PROSITE profilePS5129424.51781135IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.5E-2584135IPR009057Homeodomain-like
SMARTSM007172.2E-1485133IPR001005SANT/Myb domain
PfamPF002491.3E-1386130IPR001005SANT/Myb domain
CDDcd001672.10E-1088128No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MGRQPGSTGG GVQQKLRKGL WSPEEDEKLY NHIIRYGALP LTQHDTVCMP SLATLALLIN  60
ANAWLQRCGK SCRLRWINYL RPDLKRGSFS QQEEDAIVGL HEILGNRWSQ IASHLPGRTD  120
NEIKNFWNSC LKKKLRQRGI DPSTHKPISS ANSAAAAASE DQKQQAASAD GGITAAPKQQ  180
QHVFDPFPLT DSFGGGFVDA ALYGHLGGGK DAAGGFVDYS SVLDVSENLG YGESSSNSSN  240
NWNCAPEVND GDALHWGSEN KQVEQSIPHF DFDIGRGAVV SEFNLEFF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-24161355108B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1130136LKKKLRQ
Functional Description ? help Back to Top
Source Description
UniProtPossible transcription activator in response to an external signal. May be involved in the regulation of flavonoid biosynthesis.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01627.1.g00170.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9657051e-111EU965705.1 Zea mays clone 288150 myb-related protein Hv33 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001150099.11e-130myb-related protein Hv33
SwissprotP200277e-91MYB3_HORVU; Myb-related protein Hv33
TrEMBLB6TL401e-129B6TL40_MAIZE; Myb-related protein Hv33
STRINGGRMZM2G003406_P011e-125(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23273391
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26660.14e-57myb domain protein 86