PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc01624.1.g00010.1.am.mkhc

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 343aa MW: 36850.6 Da PI: 5.4753

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc01624.1.g00010.1.am.mkhc	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	42.2	1.4e-13	124	175	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +rr+h ++Er+RR+++N+ ++ Lr+++P++ ++++ + a+i+ A++++k+L+ Zpz_sc01624.1.g00010.1.am.mkhc 124 QRRNHIAVERNRRRQMNEYLAVLRSVMPPS---YAQRGDQASIVAGAINFVKELE 175 79**************************...*****************995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	3.49E-13	122	179	No hit	No description
SuperFamily	SSF47459	7.46E-17	122	193	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.561	123	174	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.3E-14	124	187	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	7.0E-11	124	175	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.1E-9	129	180	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 343 aa Download sequence Send to blast
MALEAVVFPP EHLACAAKVM SMGAFSASPE GCGGVDIEEY FEDKGGVVLH GADAAANWDA 60 ALCCPCSVAP GAVEERWDVQ GRSVSPPPVP PALAPERGKA SAPASRRRRK RPKAVKNQEE 120 MESQRRNHIA VERNRRRQMN EYLAVLRSVM PPSYAQRGDQ ASIVAGAINF VKELEQTLQS 180 LEAQKRGAQP FAGFFTFPQY STGAVASGAA SDDNEGLSGG DHHQCAPRRG AADIEVAVVE 240 SHANVKVLAP RRPRQLLRMV VALQCLGLTV LHLNVTTTAD NLAFYTFSLK IEDECCQIED 300 ECRLSSADEI AAAVNEILAK ISEEDAAGQP STLAGETSSR ERV

Sequence ? help Back to Top

Protein Sequence Length: 343 aa Download sequence Send to blast

MALEAVVFPP EHLACAAKVM SMGAFSASPE GCGGVDIEEY FEDKGGVVLH GADAAANWDA  60
ALCCPCSVAP GAVEERWDVQ GRSVSPPPVP PALAPERGKA SAPASRRRRK RPKAVKNQEE  120
MESQRRNHIA VERNRRRQMN EYLAVLRSVM PPSYAQRGDQ ASIVAGAINF VKELEQTLQS  180
LEAQKRGAQP FAGFFTFPQY STGAVASGAA SDDNEGLSGG DHHQCAPRRG AADIEVAVVE  240
SHANVKVLAP RRPRQLLRMV VALQCLGLTV LHLNVTTTAD NLAFYTFSLK IEDECCQIED  300
ECRLSSADEI AAAVNEILAK ISEEDAAGQP STLAGETSSR ERV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	125	135	RNHIAVERNRR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc01624.1.g00010.1.am.mkhc

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT060512	2e-88	BT060512.1 Zea mays full-length cDNA clone ZM_BFb0009D23 mRNA, complete cds.
GenBank	EU966002	2e-88	EU966002.1 Zea mays clone 290696 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025828341.1	1e-131	transcription factor bHLH94-like
Swissprot	Q9C7T4	6e-64	BH096_ARATH; Transcription factor bHLH96
TrEMBL	A0A0A9FQM1	1e-143	A0A0A9FQM1_ARUDO; Uncharacterized protein
STRING	Pavir.Aa00538.1.p	1e-136	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP10462	28	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72210.1	1e-64	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]